New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2992148	NA (NA)	9 (0.110)	6/236	NT	NA	intergenic (‑36/+98)	hcpC‑I/PP_2616	hemolysin‑coregulated protein/hypothetical protein
	?	NC_002947	= 2992160	NA (NA)					intergenic (‑48/+86)	hcpC‑I/PP_2616	hemolysin‑coregulated protein/hypothetical protein

ATCTGATCTTCATGGCCTTGTTGGAACACGTTGCCGACGGAGTCAGCGGTGAAGGCGCCAGCGGTGATGTTGCCTTGGGTCTGGCCTACGATCTTGATGTAAGCGGGTGTTGGCATGGCAGTTACTCCTGCGTCCATGTGGGTAAAGCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2991997‑2992148 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgcCACCTGTGGTGCGCGTGCTTTACCCACATGGACGCAGGAGTAACTGCCATGCCAACACCCGCTTACATCAAGATCGTAGGCCAGACCCAAGGCAACATCACCGCTGGCGCCTTCACCGCTGACTCCGTCGGCAACGTGTTCCAACAAGG  <  NC_002947/2992160‑2992012                                                                                                                                                                                                                                                                                                               ATCTGATCTTCATGGCCTTGTTGGAACACGTTGCCGACGGAGTCAGCGGTGAAGGCGCCAGCGGTGATGTTGCCTTGGGTCTGGCCTACGATCTTGATGTAAGCGGGTGTTGGCATGGCAGTTACTCCTGCGTCCATGTGGGTAAAGCAC                                                                                                                                                         <  1:495999/150‑1                    GTTGGAACACGTTGCCGACGGAGTCAGCGGTGAAGGCGCCAGCGGTGATGTTGCCTTGGGTCTGGCCTACGATCTTGATGTAAGCGGGTGTTGGCATGGCAGTTACTCCTGCGTCCATGTGGGTAAAGCACGCCACCTGTGGTGCGCGTG                                                                                                                                      <  1:2214299/150‑1                                                       GCGCCAGCGGTGATGTTGCCTTGGGTCTGGCCTCCGATCTTGATGTAAGCGGGTGTTGGCATGGCAGTTACTCCTGCGTCCATGTGGGTAAAGCACGCCACCTGTGGTGCGCGTGC                                                                                                                                     >  1:802898/1‑116                                                       GCGCCAGCGGTGATGTTGCCTTGGGTCTGGCCTACGATCTTGATGTAAGCGGGTGTTGGCATGGCAGTTACTCCTGCGTCCATGTGGGTAAAGCACGCCACCTGTGGTGCGCGTGC                                                                                                                                     <  2:802898/116‑1                                                                               GTCTGGCCTACGATCTTGATGTAAGCGGGTGTTGGCATGGCAGTTACTCCTGCGTCCATGTGGGTAAAGCACGCCACCTGTGGTGCGCGTG                                                                                                                                      <  1:2322498/91‑1                                                                               GTCTGGCCTACGATCTTGATGTAAGCGGGTGTTGGCATGGCAGTTACTCCTGCGTCCATGTGGGTAAAGCACGCCACCTGTGGTGCGCGTG                                                                                                                                      >  2:2322498/1‑91                                                                                                GATGTAAGCGGGTGTTGGCATGGCAGTTACTCCTGCGTCCATGTGGGTAAAGCACGCCACCTGTGGTGCGCGTG                                                                                                                                      >  1:955104/1‑74                                                                                                GATGTAAGCGGGTGTTGGCATGGCAGTTACTCCTGCGTCCATGTGGGTAAAGCACGCCACCTGTGGTGCGCGTG                                                                                                                                      <  2:955104/74‑1                                                                                                   GTAAGCGGGTGTTGGCATGGCAGTTACTCCTGCGTCCATGTGGGTAAAGCACGCCACCTGTGGTGCGCGTGC                                                                                                                                     <  1:50306/72‑1                                                                                                   GTAAGCGGGTGTTGGCATGGCAGTTACTCCTGCGTCCATGTGGGTAAAGCACGCCACCTGTGGTGCGCGTGC                                                                                                                                     >  2:50306/1‑72                                                                                                                                               TAAAGCACGCCACCTGTGGTGCGCGTGCTTTACCCACATGGACGCAGGAGTAACTGCCATGCCAACACCCGCTTACATCAAGATCGTAGGCCAGACCCAAGGCAACATCACCGCTGGCGCCTTCACCGCTGACTCCGTCGGCAACGTGTT           >  1:1003088/1‑150                                                                                                                                                    CACGCCACCTGTGGTGCGCGTGCTTTACCCACATGGACGCAGGAGTAACTGCCATGCCAACACCCGCTTACATCAAGATCGTAGTCCAGACCCAAGGCAACATCACCGCTGGCGCC                                        <  1:1069297/116‑1                                                                                                                                                    CACGCCACCTGTGGTGCGCGTGCTTTACCCACATGGACGCAGGAGTAACTGCCATGCCAACACCCGCTTACATCAAGATCGTAGGCCAGACCCAAGGCAACATCACCGCTGGCGCCTTCACCGCTGACTCCGTCGGCAACGTGTTCCAAC      >  2:728044/1‑150                                                                                                                                                    CACGCCACCTGTGGTGCGCGTGCTTTACCCACATGGACGCAGGAGTAACTGCCATGCCAACACCCGCTTACATCAAGATCGTAGGCCAGACCCAAGGCAACATCACCGCTGGCGCC                                        >  2:1069297/1‑116                                                                                                                                                       GCCACCTGTGGTGCGCGTGCTTTACCCACATGGACGCAGGAGTAACTGCCATGCCAACACCCGCTTACATCAAGATCGTAGGCCAGACCCAAGGCAACATCACCGCTGGCGCCTTCACCGCTGACTCCGTCGGCAACGTGTTCCAACAAG   >  1:426928/1‑150                                                                                                                                                       GCCACCTGTGGTGCGCGTGCTTTACCCACATGGACGCAGGAGTAACTGCCATGCCAACACCCGCTTACATCAAGATCGTAGGCCAGACCCAAGGCAACAACACCGCTGGCGCCTTCACCGCTGACTCCGTCGGCAACGTGTTCCAACAgg   <  2:703782/150‑3                                                                                                                                                        CCACCTGTGGTGCGCGTGCTTTACCCACATGGACGCAGGAGTAACTGCCATGCCAACACCCGCTTACATCAAGATCGTAGGCCAGACCCAAGGCAACATCACCGCTGGCGCCTTCACCGCTGACTCCGTCGGCAACGTGTTCCAACAAGG  <  2:208773/150‑1                                                                                                                                                                                                                                                                                                               ATCTGATCTTCATGGCCTTGTTGGAACACGTTGCCGACGGAGTCAGCGGTGAAGGCGCCAGCGGTGATGTTGCCTTGGGTCTGGCCTACGATCTTGATGTAAGCGGGTGTTGGCATGGCAGTTACTCCTGCGTCCATGTGGGTAAAGCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2991997‑2992148 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgcCACCTGTGGTGCGCGTGCTTTACCCACATGGACGCAGGAGTAACTGCCATGCCAACACCCGCTTACATCAAGATCGTAGGCCAGACCCAAGGCAACATCACCGCTGGCGCCTTCACCGCTGACTCCGTCGGCAACGTGTTCCAACAAGG  <  NC_002947/2992160‑2992012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.