New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3029319 =	103 (1.160)	7 (0.080)	7/242	NT	6.5%	coding (929/1653 nt)	pcaY	aromatic acid chemoreceptor
	?	NC_002947	3029358 =	99 (1.140)					coding (968/1653 nt)	pcaY	aromatic acid chemoreceptor

CATGGCTTCGGTGCCGTCGATGTTTTCGCTGACTTGCCGGCGGCTTTGCGCGGCCAGCTGGTTGGATTCAC‑TGGTGGTTTGCGAGGTGGTGATCGCGTTGCGCGCAACTTCCTCCACTGCCGTGGTCATTTCGGTCACGGCAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3029467‑3029319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAAGCCGCCGGCAAGTCAGCGAAAACATCGACGGCACCGAAGCCATGACCCGCGAAATCCAGACCAGCAGTGCGCACCTGCAGCA  >  NC_002947/3029358‑3029505                                                                                                                                                                                                                                                                                                            cagGGCTTCGGTGCCGTCGATGTTTTCGGTGACTTGGCGGCGGCTTTGCGCGGCCAGCTGGTTGG‑CACACAAGGTTTTTTGCGAGGTGGTGATCGCGTTGCGCGCAACTTCCTCCACTGCCGTGGTCATTTCGGTCACGGCAGTGGCGGc                                                                                                                                                     <  1:1022310/147‑2                                                                                                              TTCCTCCACTGCCGTGGTCATTTCGGTCACGGCAGTGGAGGAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAAGCCGCCGGCAAGTCAGCGAAAACATCGACGGCACCGAAGCCAT                                         >  2:359134/1‑150                                                                                                               TCCTCCACTGCCGTGGTCATTTCGGTCACGGCAGTGGCGGAAGTTGCGCGCAACGCGATCACCACCTCGCAAA                                                                                                                     <  1:1108197/73‑1                                                                                                               TCCTCCACTGCCGTGGTCATTTCGGTCACGGCAGTGGCGGAAGTTGCGCGCAACGCGATCACCACCTCGCAAA                                                                                                                     >  2:1108197/1‑73                                                                                                                 CTCCACTGCCGGGGTCAGGTCGGTCACGGCAGTGGCGGAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAAGCCGCCGGCAAGTCAGCGAAAACATCGACGGCACCGAAGCCATGAC                                      >  2:1900921/1‑150                                                                                                                    CACTGCCGTGGTCATTTCGGTCACGGCAGTGGAGGAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAAGCCGCCGGCAAGTCAGCGAAAACATCGACGGCACCGAAGCCATGACCCG                                   >  1:1382877/1‑150                                                                                                                              GTCATTTCGGTCACGGCAGTGGCGGAAGTTGCGCGCAACGCGATC                                                                                                                                  >  1:1697998/1‑45                                                                                                                              GTCATTTCGGTCACGGCAGTGGCGGAAGTTGCGCGCAACGCGATC                                                                                                                                  <  2:1697998/45‑1                                                                                                                                                     GGAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAAGCCGCCGGCAAGTCAGCGAAAACATCGACGGCACCGAAGCCATGACCCGCGAAATCCAGACCAGCAGTGCGCACCTGCAGCA  <  1:1713063/150‑1                                                                                                                                                                                                                                                                                                            CATGGCTTCGGTGCCGTCGATGTTTTCGCTGACTTGCCGGCGGCTTTGCGCGGCCAGCTGGTTGGATTCAC‑TGGTGGTTTGCGAGGTGGTGATCGCGTTGCGCGCAACTTCCTCCACTGCCGTGGTCATTTCGGTCACGGCAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3029467‑3029319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAAGCCGCCGGCAAGTCAGCGAAAACATCGACGGCACCGAAGCCATGACCCGCGAAATCCAGACCAGCAGTGCGCACCTGCAGCA  >  NC_002947/3029358‑3029505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.