New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3117438 =	88 (0.990)	6 (0.070)	5/232	NT	6.9%	coding (1187/1188 nt)	cfa	cyclopropane‑fatty‑acyl‑phospholipid synthase
	?	NC_002947	3117473 =	78 (0.930)					coding (1152/1188 nt)	cfa	cyclopropane‑fatty‑acyl‑phospholipid synthase

CTGACGGACCTTGGCTACGACGACATGTTCCAGCGCCTGTGGGAGTTTTACCTCTGCTACTGCCAGGGCGGTTTCGAGGAGCGCGCGATCGGTGTTGCGCACCTGCTCTGGGCAGCACCCCAGGCACGCCGTGCGCCCTTGCCTGGCGGTGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3117592‑3117438 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcctgGGGTGCTGCCCAGAGCAGGTGCGCAACACCGATCGCGCGCTCCTCGAAACCGCCCTGGCAGTAGCAGAGGTAAAACTCCCACAGGCGCTGGAACATGTCGTCGTAGCCAAGGTCCGTCAGCGCAGTGCGTGCCTGACGCAGGTTTTCA  >  NC_002947/3117473‑3117620                                                                                                                                                                                                                                                                                                                 CTGACGGACCTTGGCTACGACGACATGTTCCAGCGCCTGTGGGAGTTTTACCTCTGCTACTGCCAGGGCGGTTTCGAGGAGCGCGCGATCGGTGTTGCGCACCTGCTCTGGGCAGCACCCCCGGCACGCCGTGCGCCCTTGCCTGGCGGT                                                                                                                                                           <  1:1014884/150‑1  cGACGGACCTTGGCTACGACGACATGTTCCAGCGCCTGTGGGAGTTTTACCTCTGCTACTGCCAGGGCGGTTTCGAGGAGCGCGCGATCGGTGTTGCGCACCTGCTCTGGGCAGCACCCCAGGCACGCCGTGCGCCCTTGCCTGGCGGTG                                                                                                                                                          >  2:1653452/2‑150   GACGGACCTTGGCTACGACGACATGTTCCAGCGCCTGTGGGAGTTTTACCTCTGCTACTGCCAGGGCGGTTTCGAGGAGCGCGCGATCGGTGTTGCGCACCTGCTCTGGGCAGCACCCCAGGCACGCCGTGCGCCCTTGCCTGGCGGTGC                                                                                                                                                         <  1:903482/150‑1     CGGACCTTGGCTACGACGACATGTTCCAGCGCCTGTGGGAGTTTTACCTCTGCTACTGCCAGGGCGGTTTCGAGGAGCGCGCGATCGGTGTTGCGCACCTGCTCTGGGCAGCACCCCAGGCACGCCGTGCGCCCTTGCCTGGCGGTGCCT                                                                                                                                                       <  1:1937721/150‑1                         ATGTTCCAGCGCCTGTGGGAGTTTTACCTCTGCTACTGCCAGGGCGGTTTCGAGGAGCGCGCGATCGGTGTTGCGCACCTGCTCTGGGCAGCACCCCAGGCACGCCGTGCGCCCTTGCCTGGCGGT                                                                                                                                                           <  1:1134622/126‑1                         ATGTTCCAGCGCCTGTGGGAGTTTTACCTCTGCTACTGCCAGGGCGGTTTCGAGGAGCGCGCGATCGGTGTTGCGCACCTGCTCTGGGCAGCACCCCAGGCACGCCGTGCGCCCTTGCCTGGCGGT                                                                                                                                                           >  2:1134622/1‑126                                                                                                             TGGGCAGCACCCCAGGCACGCCGTGCGCCCTTGCCTGGCGGTGCCTGGGGTGCTGCCCAGAGCAGGTGCGCAACACCGATCGCGCGCTCCTCGAAACCGCCCTGGCAGTAGCA                                                                                    <  1:2365849/113‑1                                                                                                             TGGGCAGCACCCCAGGCACGCCGTGCGCCCTTGCCTGGCGGTGCCTGGGGTGCTGCCCAGAGCAGGTGCGCAACACCGATCGCGCGCTCCTCGAAACCGCCCTGGCAGTAGCA                                                                                    >  2:2365849/1‑113                                                                                                                       CCCAGGCACGCCGTGCGCCCTTGCCTGGCGGTGCCTGGGGTGCTGCCCAGAGCAGGTGCGCAACACCGATCGCGCGCTCCTCGAAACCGCCCTGGCAGTAGCAGAGGTAAAACTCCCTCAG                                                                  <  2:602809/121‑1                                                                                                                       CCCAGGCACGCCGTGCGCCCTTGCCTGGCGGTGCCTGGGGTGCTGCCCAGAGCAGGTGCGCAACACCGATCGCGCGCTCCTCGAAACCGCCCTGGCAGTAGCAGAGGTAAAACTCCCACAG                                                                  >  1:602809/1‑121                                                                                                                       CCCAGGCACGCCGTGCGCCCTTGCCTGGC‑GTGCCTGGGGTGCTGCCCAGAGCAGGTGCGCAACACCGATCGCGCGCTCCTCGAAACCGCCCTGGCAGTAGCAGAGGTAAAACTCCCACA                                                                   >  1:751089/1‑119                                                                                                                       CCCAGGCACGCCGTGCGCCCTTGCCTGGC‑GTGCCTGGGGTGCTGCCCAGAGCAGGTGCGCAACACCGATCGCGCGCTCCTCGAAACCGCCCTGGCAGTAGCAGAGGTAAAACTCCCACA                                                                   <  2:751089/119‑1                                                                                                                                                     GTGCCTGGGGTGCTGCCCAGAGCAGGTGCGCAACACCGATCGCGCGCTCCTCGAAACCGCCCTGGCAGTAGCAGAGGTAAAACTCCCACAGGCGCTGGAACATGTCGTCGTAGCAAAGGTCCGTCAGCGCAGTGCGTGCCTGACGCAGGT       >  1:1462555/1‑150                                                                                                                                                        CCTGGGGTGCGGCCCAGAGCAGGTGCGCAACACCGATCTCGCGCTCCTCGAAACCGCCCTTGCAGTAGCAGAGGTAAAACTCCCACAGGCGCTGGAACATGTCGTCGTAGCCAAGGTCCGTCAGCGCAGTGCGTGCCTGACGCAGGTTTT    <  2:1635836/150‑1                                                                                                                                                         CTGGGGTGCTGCCCAGAGCAGGTGCGCAACACCGATCGCGCGCTCCTCGAAACCGCCCTGGCAGTAGCAGAGGTAAAACTCC                                                                       >  1:1927689/1‑82                                                                                                                                                         CTGGGGTGCTGCCCAGAGCAGGTGCGCAACACCGATCGCGCGCTCCTCGAAACCGCCCTGGCAGTAGCAGAGGTAAAACTCC                                                                       <  2:1927689/82‑1                                                                                                                                                          TGGGGTGCTGCCCAGAGCAGGTGCGCAACACCGATCGCGCGCTCCTCGAAACCGCCCTGGCAGTAGCAGAGGTAAAACTCCCACAGGCGCTGGAACATGTCGTCGTAGCCAAGGTCCGTCAGCGCAGTGCGTGCCTGACGCAGGTTTTCA  >  2:1784415/1‑150                                                                                                                                                                                                                                                                                                                 CTGACGGACCTTGGCTACGACGACATGTTCCAGCGCCTGTGGGAGTTTTACCTCTGCTACTGCCAGGGCGGTTTCGAGGAGCGCGCGATCGGTGTTGCGCACCTGCTCTGGGCAGCACCCCAGGCACGCCGTGCGCCCTTGCCTGGCGGTGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3117592‑3117438 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcctgGGGTGCTGCCCAGAGCAGGTGCGCAACACCGATCGCGCGCTCCTCGAAACCGCCCTGGCAGTAGCAGAGGTAAAACTCCCACAGGCGCTGGAACATGTCGTCGTAGCCAAGGTCCGTCAGCGCAGTGCGTGCCTGACGCAGGTTTTCA  >  NC_002947/3117473‑3117620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.