New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3214891	70 (0.790)	5 (0.060)	5/228	NT	6.4%	coding (763/3129 nt)	mexD	multidrug RND transporter MexD
	?	NC_002947	= 3214924	81 (0.990)					coding (796/3129 nt)	mexD	multidrug RND transporter MexD

CGACATCAACTCGGCCATTCGCGGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3214734‑3214891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgccaCATCACCCAGGCGGACGCTGGAGCCATCGGGGTTGGCGCGCAGGACGATGCCGGCGAACGCTTCCGGGGTGTCGAGAGTGCCCTGCACGGCCAGGGTCGCGGTCAGCTCCTGCTCGCTGGCACCGGGCGTGCTGCCGAAGCTG  <  NC_002947/3214924‑3214782                                                                                                                                                                                                                                                                                                               CGACATCAACTCGGCCATTCGCGGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCT                                                                                                                                                         <  1:1557781/150‑1   ACATCAGCTCGGCCATTAGCGGCCAGATTTTTTTTTTATCGTCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGC                                                                                                                                                       <  2:2321614/150‑1     aaCAACGCGACCATTCGCTGCCAGAACGTCCTTGGACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGC                                                                                                                                                     >  2:1843705/3‑150      TCAACTCGGCCATTCGCGGCCAGAACGTCCAGGTAGGGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCG                                                                                                                                                    >  1:802884/1‑150      TCAACTCGGCCATTCGCGGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCG                                                                                                                                                    >  2:784393/1‑150                                                    CTTCTGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCACATCACCCAGGCGGACGCTGGAGCCATCGGGGTTGGCGCGCAG                                                                                                      <  1:1843705/150‑1                                                                         CAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCACATCACCCAGGCGGACGCTGGAGCCATCGGGGTTGGCGCGCAGGA                                                                                                    <  1:2136713/131‑1                                                                         CAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCACATCACCCAGGCGGACGCTGGAGCCATCGGGGTTGGCGCGCAGGA                                                                                                    >  2:2136713/1‑131                                                                                                 CCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCACATCACCCAGGCGGACGCTGGAGCCATCGGGGTTGGC                                                                                                            >  1:2364981/1‑99                                                                                                 CCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCACATCACCCAGGCGGACGCTGGAGCCATCGGGGTTGGC                                                                                                            <  2:2364981/99‑1                                                                                                                                                      TGCGCGCCACATCACCCAGGCGGACGCTGGAGCCATCGGGGTTGGCGCGCAGGACGATGCCGGCGAACGCTTCCGGGGTGTCGAGAGTGCCCTGCACGGCCAGGGTCGCGGTCAGCTCCTGCTCGCTGGCACCGGGCGTGCTGCCGAAGC    <  1:255336/150‑1                                                                                                                                                        ctgtCCACATCACCCAGGCGGACGCTGGAGCCATCGGGGTTGGCGCGCAGGACGATGCCGGCGAACGCTTCCGGGGTGTCGAGAGTGCCCTGCACGGCCAGGGTCGCGGTCAGCTCCTGCTCGCTGGCACCGGGCGTGCTGCCGAAGCTG  <  2:1109876/146‑1                                                                                                                                                                                                                                                                                                               CGACATCAACTCGGCCATTCGCGGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3214734‑3214891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgccaCATCACCCAGGCGGACGCTGGAGCCATCGGGGTTGGCGCGCAGGACGATGCCGGCGAACGCTTCCGGGGTGTCGAGAGTGCCCTGCACGGCCAGGGTCGCGGTCAGCTCCTGCTCGCTGGCACCGGGCGTGCTGCCGAAGCTG  <  NC_002947/3214924‑3214782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.