| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3329641 | 77 (0.870) | 8 (0.100) | 9/226 | NT | 9.5% | intergenic (+102/+29) | PP_2927/PP_2928 | hypothetical protein/saccharopine dehydrogenase |
| ? | NC_002947 | = 3329651 | 82 (1.010) | intergenic (+112/+19) | PP_2927/PP_2928 | hypothetical protein/saccharopine dehydrogenase | |||||
CTTCCGGCGCGCGACGCAGACGCCGTTCAACCTGATTCTGGAGGCCCGCAAGTAGAGCGTGATCTTGCGCCGGCCTCTTCGCGGGCTTGCCCGTTCCCACAGGTTACGTGCTTGTTTCAGGGCTGTGGCGATCCTGGACCTGGAAAGCAGAAGGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3329485‑3329641‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagaaggggtGCCATGCA‑GG‑ACCCCTTCTGCTTTCCAGGTCCAGGATCGCCACAGCCCTGAAACAAGCACGTAACCTGTGGGAACGGGCAAGCCCGCGAAGAGGCCGGCGCAAGATCACGCTCTACTTGCGGGCCTCCAGAATCAGGTTGAACGGCGTC < NC_002947/3329651‑3329503 CTTCCGGCGCGCGACGCAGACGCCGTTCAACCTGATTCTGGAGGCCCGCAAGTAGAGCGTGATCTTGCGCCGGCCTCTTCGCGGGCTCGCCCGTTCCCACAGGTTACGTGCTTGTTTCAGGGCTGTGGCGATCCTGGACCTGGAAAGCAG > 1:1292731/1‑150 tCGGCGCGCGACGCAGACGCCGTTCAACCTGATTCTGGAGGCCCGCAAGTAGAGCGTGATCTTGCGCCGGCCTCTTCGCGGGCTTGCCCGTTCCCACAGGTTACGTGCTTGTTTCAGGGCTGTGGCGATCCTGGACCTGGAAAGCAGAAG < 1:544515/149‑1 GCGCGCGACGCAGACGCCGTTCAACCTGATTCTGGAGGCCCGCAAGTAGAGCGTGATCTTGCGCCGGCCTCTTCGCGGGCTTGCCCGTTCCCACAGGTTACGTGCTTGTTTCAGGGCTGTGGCGATCCTGGACCTGGAAAGCAGAAGGGG > 2:2056773/1‑150 GCGCGCGACGCAGACGCCGTTCAACCTGATTCTGGAGGCCCGCAAGTAGAGCGTGATCTTGCGCCGGCCTCTTCGCGGGCTTGCCCGTTCCCACAGGTTACGTGCTTGTTTCAGGGCTGTGGCGATCCTGGACCTGGAAAGCAGAAGGGG < 1:866692/150‑1 GCGCGCGACGCAGACGCCGTCCAACCTGATTCTGGAGGCCCGTAAGTATAGCGTGATCTTGCGCCGGCCTCTTCGCGGGCTTGCCCGTTCCCACAGGTTACGTGCTTGTTTCAGGGCTGTGGCGATCCTGGACCTGGAAAGCAGAAGGGG < 1:768094/150‑1 GCGACGCAGACGCCGTTCAACCTGATTCTGGAGGCCCGCAAGTAGAGCGTGATCTTGCGCCGGCCTCTTCGCGGGCTTGCCCGTTCCCACAGGTTACGTGCTTGTTTCAGGGCTGTGGCGATCCTGGACCTGGAAAGCAGAAGGGGTGCC > 2:832228/1‑150 TTCAACCTGATTCTGGAGGCCCGCAAGTAGAGCGTGATCTTGCGCCGGCCTCTTCGCGGGCTTGCCCGTTCCCACAGGTTACGTGCTTGTTTCAGGGCTGTGGCGATCCTGGACCTGGAAAGCAGAAGGGGTGCCATGCA‑GG‑ACCCCTTC < 1:2263481/150‑1 TCAACCTGATTCTGGAGGCCCGCAAGTAGAGCGTGATCTTGCGCCGGCCTCTTCGCGGGCTTGCCCGTTCCCACAGGTTACGTGCTTGTTTCAGGGCTGTGGCGATCCTGGACCTGGAAAGCAGAAGGGGTGCCATGCA‑GG‑ACCCCTTCT < 1:832228/150‑1 CGCAAGTAGAGCGTGATCTTGCGCCGGCCTCTTCGCGGGCTTGCCCGTTCCCACAGGTTACGTGCTTGTTTCAGGGCTGTGGCGATCCTGGACCTGGAAAGCAGAAG > 1:71924/1‑107 CGCAAGTAGAGCGTGATCTTGCGCCGGCCTCTTCGCGGGCTTGCCCGTTCCCACAGGTTACGTGCTTGTTTCAGGGCTGTGGCGATCCTGGACCTGGAAAGCAGAAG < 2:71924/107‑1 GCTTGTTTCAGGGCTGTGGCGATCCTGGACCTGGAAAGCAGAAGGGGTGCCATGCA‑GG‑ACCCCTTC > 1:1783745/1‑66 GCTTGTTTCAGGGCTGTGGCGATCCTGGACCTGGAAAGCAGAAGGGGTGCCATGCA‑GG‑ACCCCTTC < 2:1783745/66‑1 CTGGACCTGGAAAGCAGAAGGGGT‑CC‑TGCATGGCACCCCTTCTGCTTTCCAGGTCCAGGATCGCCACAGCCCTGAAACAAGCACGTAACCTGTGGGAACGGGCAAGCCCGCGAAGAG < 1:1748091/117‑1 CTGGACCTGGAAAGCAGAAGGGGT‑CC‑TGCATGGCACCCCTTCTGCTTTCCAGGTCCAGGATCGCCACAGCCCTGAAACAAGCACGTAACCTGTGGGAACGGGCAAGCCCGCGAAGAG > 2:1748091/1‑117 CTGGAAAGCAGAAGGGGT‑CC‑TGCATGGCACCCCTTCTGCTTTCCAGGTCCAGGATCGCCACAGCCCTGAAACAAGCACGTAACCTGTGGGAACGGGCAAGCCCGCGAAGAGGCCGGCGCAA > 2:1135341/1‑121 CTGGAAAGCAGAAGGGGT‑CC‑TGCATGGCACCCCTTCTGCTTTCCAGGTCCAGGATCGCCACAGCCCTGAAACAAGCACGTAACCTGTGGGAACGGGCAAGCCCGCGAAGAGGCCGGCGCAA < 1:1135341/121‑1 AAGCAGAAGGGGT‑CC‑TGCATGGCACCCCTTCTGTTTTCCAGGTCCAGGATCGCCACAGCCCTGAAACAAGCACGTAACCTGTGGGAACGGGCAAGCCCGCGAAGAGGCCGGCGCAAGATCACGCTCTACTTGCGGGCCTCCAGAATCAG < 2:1294923/149‑1 AAGCAGAAGGGGT‑CC‑TGCATGGCACCCCTTCTGTTTTCCAGGTCCAGGATCGCCACAGCCCTGAAACAAGCACGTAACCTGTGGGAACGGGCAAGCCCGCGAAGAGGCCGGCGCAAGATCACGCTCTACTTGCGGGCCTCCAGAATCAG > 1:1294923/1‑149 GGGGTGCCATGCA‑GG‑ACCCCTTCTGCTTTCCAGGTCCAGGATCACCACGATGTTGAAACAAGCACGTAACCTGTGGGAACGGGCAAGCCCGCGAAGAGGCCTGCGCAAGATCACGCTCTACTTGCGGGCCTCCAGAATCAGGTTGAACGG > 1:442185/1‑150 TGCCATGCA‑GG‑ACCCCTTCTGCTTTCCAGGTCCAGGATCGCCACAGCCCTGAAACAAGCACGTAACCTGTGGGAACGGGCAAGCCCGCGAAGAGGCCGGCGCAAGATCACGCTCTACTTGCGGGCCTCCAGAATCAGGTTGAACGGCGTC < 2:545996/150‑1 CTTCCGGCGCGCGACGCAGACGCCGTTCAACCTGATTCTGGAGGCCCGCAAGTAGAGCGTGATCTTGCGCCGGCCTCTTCGCGGGCTTGCCCGTTCCCACAGGTTACGTGCTTGTTTCAGGGCTGTGGCGATCCTGGACCTGGAAAGCAGAAGGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3329485‑3329641‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagaaggggtGCCATGCA‑GG‑ACCCCTTCTGCTTTCCAGGTCCAGGATCGCCACAGCCCTGAAACAAGCACGTAACCTGTGGGAACGGGCAAGCCCGCGAAGAGGCCGGCGCAAGATCACGCTCTACTTGCGGGCCTCCAGAATCAGGTTGAACGGCGTC < NC_002947/3329651‑3329503 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |