New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3487373	92 (1.040)	6 (0.070)	6/242	NT	6.2%	coding (681/1344 nt)	PP_3093	hypothetical protein
	?	NC_002947	= 3487394	91 (1.040)					coding (660/1344 nt)	PP_3093	hypothetical protein

GCCGCCGGCAAGGTCGGCCAGGAACAGGTACAGGCGCTCTGGGTGCAGGCGCGGGTGGGCCAGTAGATGAGCCAGCTGCGGGTGGGCACGGTTGACCGTGTTCAGCAGCCAGAACAGGGTTACATCGCTGGAGCCGAACTCGGCGATCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3487223‑3487373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggCCGGCGC‑CGCGAGCGCGCCGACCAGATCGCCGAGTTCGGCTCCAGCGATGTAACCCTGTTCTGGCTGCTGAACACGGTCAACCGTGCCCACCCGCAGCTGGCTCATCTACTGGCCCACCCGCGCCTGCACCCAGAGCGCCTGTACCTG  <  NC_002947/3487394‑3487247                                                                                                                                                                                                                                                                                                              GCCGGCGGCAAGGGGGGCGAGGGACAGGTACAGGGGCGGTGGGTGCAGGCGGGGCGGGGCCAGTAGATGAGCCAACTGCGGGTGGGCACGGTTGACCGTGTTCAGCAGCCAGAACAGGGTTACATCGCTGGAGCCGAACTCGGCGATCTG                                                                                                                                                        <  2:66981/150‑1                                                           GCCAGTAGATGAGCCAGCTGCGGGTGGGCACGGTTGACCGTGTTCAGCAGCCAGAACAGGGTTACATCGCTGGAGCCGAACTCGGCGATCTGGCCGGCGC‑CGCGAGCGCGCCGACCAGA                                                                                                                            <  1:979530/119‑1                                                           GCCAGTAGATGAGCCAGCTGCGGGTGGGCACGGTTGACCGTGTTCAGCAGCCAGAACAGGGTTACATCGCTGGAGCCGAACTCGGCGATCTGGCCGGCGC‑CGCGAGCGCGCCGACCAGA                                                                                                                            >  2:979530/1‑119                                                                                               ACCGTGTTCAGCAGCCAGAACAGGGTTACATCGCTGGAGCCGAACTCGGCGATCTGGCCGGCGC‑CGCGAGCGCGCCGACCA                                                                                                                              >  1:861961/1‑81                                                                                               ACCGTGTTCAGCAGCCAGAACAGGGTTACATCGCTGGAGCCGAACTCGGCGATCTGGCCGGCGC‑CGCGAGCGCGCCGACCA                                                                                                                              <  2:861961/81‑1                                                                                                   TGTTCAGCAGCCAGAACAGGGTTACATCGCTGGAGCCGAACTCGGCGATCTGGCCGGCGC‑CGCGAGCGCGCCGACCAGATCGCCGA                                                                                                                     <  1:840836/86‑1                                                                                                                                            TCGGCGATCTGGTCGGCGCGCTCGCG‑GCGCCGGCCAGATCGCCGAGTTCGGCTCCAGCGATGTAACCCTGTTCTGGCTGCTGAACA                                                                            <  2:840836/86‑1                                                                                                                                                      GGCCGGCGC‑CGCGAGCGCGCCGACCAGATCGCCGAGTTCGGCTCCAGCGATGTAACCCTGTTCTGGCTGCTGAACACGGTCAACCGTGCCCACCCGCAGCTGGCTCATCTACTGGCCCACCCGCGCCTGCACCCAGAGCGCCTGTACCTG  >  1:1278529/1‑150                                                                                                                                                                                                                                                                                                              GCCGCCGGCAAGGTCGGCCAGGAACAGGTACAGGCGCTCTGGGTGCAGGCGCGGGTGGGCCAGTAGATGAGCCAGCTGCGGGTGGGCACGGTTGACCGTGTTCAGCAGCCAGAACAGGGTTACATCGCTGGAGCCGAACTCGGCGATCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3487223‑3487373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggCCGGCGC‑CGCGAGCGCGCCGACCAGATCGCCGAGTTCGGCTCCAGCGATGTAACCCTGTTCTGGCTGCTGAACACGGTCAACCGTGCCCACCCGCAGCTGGCTCATCTACTGGCCCACCCGCGCCTGCACCCAGAGCGCCTGTACCTG  <  NC_002947/3487394‑3487247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.