| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3525355 = | 83 (0.940) | 5 (0.060) | 5/232 | NT | 6.7% | intergenic (+163/‑243) | PP_3115/lexA‑II | transposase/transcriptional repressor |
| ? | NC_002947 | 3525403 = | 62 (0.740) | intergenic (+211/‑195) | PP_3115/lexA‑II | transposase/transcriptional repressor | |||||
ATCTGGATATCCCATGCTGACCGCCCTGCTGTTCGACCTTGACGGTACCCTCACCGACACTGACACCCTGCACCTGCAGGCCTTTCGCCAACTGCTGCGCGAACACGACGGCCGCGAGCTGAGCCAGGCGCAGTTCGACGCCCAGGTCAGCGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3525510‑3525355‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccgTCGTGTTCGCGCAGCAGTTGGCGAAAGGCCTGCAGGTGCAGGGTGTCAGTGTCGGTGAGGGTACCGTCAAGGTCGAACAGCAGGGCGGTCAGCATGGGATATCCAGATGAAAAAACACAAGCCAGGGGATCATAACCAAAGCTGAC > NC_002947/3525403‑3525548 ATCTGGATATCCCATGCTGACCGCCCTGCTGTTCGACCTTGACGGTACCCTCACCGACACTGACACCCTGCACCTGCAGGCCTTTCGCCAACTGCTGCGCGAACACGACGGCCGCGAGTTGAGCCAGGAAAAGTTCGACGCCCAGGTCAG > 1:735004/1‑150ATCTGGATATCCCATGCTGACCGCCCTGCTGTTCGACCTTGACGGTACCCTCACCGACACTGACACCCTGCACCTGCAGGCCTTTCGCCAACTGCTGCGCGAACACGACGGCCGCGAGCTGAGCCAGGCGCAGTTCGACGCCCAGGTCAG > 1:2305184/1‑150 TCTGGATATCCCATGCTGACCGCCCTGCTGTTCGACCTTGACGGTACCCTCACCGACACTGACACCCTGCACCTGCAGGCCTTTCGCCAACTGCTGCGCGAACACGACGGCCGCGAGCTGAGCCAGGCGCAGTTCGACGCCCAGGTCAGC > 1:1710067/1‑150 TGGATATCCCATGCTGACCGCCCTGCTGTTCGACCTTGACGGTACCCTCACCGACACTGACACCCTGCACCTGCAGGCCTTTCGCCAACTGCTGCGCGAACACGACGGCCGCGAGCTGAGCCAGGCGCAGTTCGACGCCCAGGTCAGCGG > 1:1911010/1‑150 GATATCCCATGCTGACCGCCCTGCTGTTCGACCTTGACGGTACCCTCACCGACACTGACACCCTGCACCTGCAGGCCTTTCGCCAACTGCTGCGCGAACACGACGGCCGCGAGCTGAGCCAGGCGCAGTTCGACGCCCAGGTCAGCGGCC > 2:691791/1‑150 GATATCCCATGCTGACCGCCCTGCTGTTCGACCTTGACGGTACCCTCACCGACACTGACACCCTGCACCTGCAGGCCTTTCGCCAACTGCTGCGCGAACACGACGGCCGCGAGCTGAGCCAGGCGCAGTTCGACGCCCAGGTCAGCGGCC > 1:1822857/1‑150 CCTGCACCTGCAGGCCTTTCGCCAACTGCTGCGCGAACACGACGGCCGCGAGCTGAGCCAGGCGCAGTTCGACGCCCAGGTCAGC > 2:1983800/1‑85 CCTGCACCTGCAGGCCTTTCGCCAACTGCTGCGCGAACACGACGGCCGCGAGCTGAGCCAGGCGCAGTTCGACGCCCAGGTCAGC < 1:1983800/85‑1 CGAACACGACTGCCGCGAGCTGAGCCAGGCGCAGTTCGACGCCCAGGTCAGCGGCCGTCGTGTTCGCGCAGCAGTTGGCGAAAGGCCTGCAGGTGCAGGGTGTCAGTGTCGGTGAGGGTACCGTCAAGGTCGAACAGCAGG < 2:1583284/141‑1 CGAACACGACGGCCGCGAGCTGAGCCAGGCGCAGTTCGACGCCCAGGTCAGCGGCCGTCGTGTTCGCGCAGCAGTTGGCGAAAGGCCTGCAGGTGCAGGGTGTCAGTGTCGGTGAGGGTACCGTCAAGGTCGAACAGCAGG > 1:1583284/1‑141 GACGGCCGCGAGCTGAGCCAGGCGCAGTTCGACGCCCAGGTCAGCGGCCGTCGTGTTCGCGCAGCAGTTGGCGAAAGGCCTGCAGGTGCAGGGTGTCAGTGTCGGTGAGGGTACCGTCAAGGACGAACAGCAGGGCGGTCAGCATGGGAT > 1:1344937/1‑150 CCGCGAGCTGAGCCAGGCGCAGTTCGACGCCCAGGTCAGCGGCCGTCGTGTTCGCGCAGCAGTTGGCGAAAGGCCTGCAGGTGCAGGGTGTCAGTGTCGGTGAGGGTACCGTCAAGGTCGAACAGCAGGGCGGTCAGCATGGGATATCC < 1:790515/149‑1 CCGCGAGCTGAGCCAGGCGCAGTTCGACGCCCAGGTCAGCGGCCGTCGTGTTCGCGCAGCAGTTGGCGAAAGGCCTGCAGGTGCAGGGTGTCAGTGTCGGTGAGGGTACCGTCAAGGTCGAACAGCAGGGCGGTCAGCATGGGATATCC > 2:790515/1‑149 GGCCGTCGTGTTCGCGCAGCAGTTGGCGAAAGGCCTGCAGGTGCAGGGTGTCAGTGTCGGTGAGGGTACCGTCAAGGTCGAACAGCAGGGCGGTCAGCATGGGATATCCAGATGAAAAAACACAAGCCAGGGGATCATAACCAAAGCTGA < 1:1904001/150‑1 GCCGTCGTGTTCGCGCAGCAGTTGGCGAAAGGCCTGCAGGTGCAGGGTGTCAGTGTCGGTGAGGGTACCGTCAAGGTCGAACAGCAGGGCGGTCAGCATGGGATATCCAGATGAAAAAACACAAGCCAGGGGATCATAACCAAAGCTGAC > 1:1662306/1‑150 CGTCGTGTTCGCGCAGCAGTTGGCGAAAGGCCTGCAGGTGCAG > 2:1652748/1‑43 CGTCGTGTTCGCGCAGCAGTTGGCGAAAGGCCTGCAGGTGCAG < 1:1652748/43‑1 ATCTGGATATCCCATGCTGACCGCCCTGCTGTTCGACCTTGACGGTACCCTCACCGACACTGACACCCTGCACCTGCAGGCCTTTCGCCAACTGCTGCGCGAACACGACGGCCGCGAGCTGAGCCAGGCGCAGTTCGACGCCCAGGTCAGCGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3525510‑3525355‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccgTCGTGTTCGCGCAGCAGTTGGCGAAAGGCCTGCAGGTGCAGGGTGTCAGTGTCGGTGAGGGTACCGTCAAGGTCGAACAGCAGGGCGGTCAGCATGGGATATCCAGATGAAAAAACACAAGCCAGGGGATCATAACCAAAGCTGAC > NC_002947/3525403‑3525548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |