| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3758842 | 69 (0.780) | 5 (0.060) | 5/234 | NT | 6.7% | coding (64/612 nt) | PP_3323 | CobW/P47K family protein |
| ? | NC_002947 | = 3758849 | 74 (0.880) | coding (71/612 nt) | PP_3323 | CobW/P47K family protein | |||||
GTAAATGCGCCGCCTGTACTCGCCGTGATGCAGGCGAGGACTGAGCAGAGCCGCACGCATGCGCACCACCCTTTATCATGAAGCTTCCCGATGAGCACCCCTGCCCCCCATACCAACGAAGCCGCGCGGCTGCCCGTCACTGTACTTTCCGGC‑T‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3758689‑3758842‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggc‑tCCGAGGAAGCCGGAAAGTACAGTGACGGGCAGCCGCGCGGCTTCGTTGGTATGGGGGGCAGGGGTGCTCATCGGGAAGCTTCATGATAAAGGGTGGTGCGCATGCGTGCGGCTCTGCTCAGTCCTCGCCTGCATCACGGCGAGTACAGG < NC_002947/3758849‑3758701 GTAAATGCGCCGCCTGTACTCGCCGTGATGCAGGCGAGGACTGAGCAGAGCCGCACGCATGCGCACCACCCTTTATCATGAAGCTTCCCGATGAGCACCCCTGCCCCCCATACCAACGAAGCCGCGCGGCTGCCCGTCACTGTACTTTCC < 1:1506182/150‑1GTAAATGCGCCGCCTGTACTCGCCGTGATGCAGGCGAGGACTGAGCAGAGCCGCACGCATGCGCACCACCCTTTATCATGAAGCTTCCCGATGAGCACCCCTGCCCCCCATACCAACGAAGCCGCGCGGCTGCCCGTCACTGTACTTTCC > 1:729981/1‑150 TCGCCGTGATGCAGGCGAGGACTGAGCAGAGCCGCACGCATGCGCACCACCCTTTATCATGAAGCTTCCCGATGAGCACCCCTGCCCCCCATACCCACGACGCCGCGCGGCTGCCCGTCACTGTACTTTCCGGC‑TCCGAGGAAGCCGGAA < 1:664788/150‑1 CACCCCTGCCCCCCATACCAACGAAGCCGCGCGGCTGCCCGTCACTGTACTTTCCGGC‑TCCGAGGAAGCCGGAAA < 1:2281281/75‑1 CACCCCTGCCCCCCATACCAACGAAGCCGCGCGGCTGCCCGTCACTGTACTTTCCGGC‑TCCGAGGAAGCCGGAAA > 2:2281281/1‑75 GTCACTGTACTTTCCGGCTTCCTCGG‑AGCCGGAAAGTACAGTGACGGGCAGCCGCGCGGCTTCGTTGGTATGGGGGGCAGGGGTGCTCATCG < 2:433812/92‑1 GTCACTGTACTTTCCGGC‑TTCCTCGGAGCCGGAAAGTACAGTGACGGGCAGCCGCGCGGCTTCGTTGGTATGGGGGGCAGGGGTGCTCATCG > 1:433812/1‑92 CCGGC‑TCCGAGGAAGCCGGAAAGTACAGTGACGGGCAGCCGCGCGGCTTCGTTGGTATGGGGGGCAGGGGTGCTCATCGGGAAGCTTCATGATAAAG < 1:2283042/97‑1 CCGGC‑TCCGAGGAAGCCGGAAAGTACAGTGACGGGCAGCCGCGCGGCTTCGTTGGTATGGGGGGCAGGGGTGCTCATCGGGAAGCTTCATGATAAAG > 2:2283042/1‑97 CCGCC‑TCCGAGGAAGCCGGAAAGTACAGTGACGAGCAGCCGGGCGGCTTCGTTGGTAGGGGGGGCAGGGGTGCTCATCGGGAAGCTTCATGATAAAGGGTGGTGCGCATGCGTGCGGCTCTGCTCAGTCCTCGCCTGCATCACGGCGAGT < 1:953943/150‑1 CGGC‑TCCGAGGAAGCCGGAAAGTACAGTGACGGGCAGCCGCGCGGCTTCGTTGGTATGGGGGGCAGGGGTGCTCATCGGGAAGCTTCATGATAAAGGGTGGTGCGCATGCGTGCGGCTCTGCTCAGTCCTCGCCTGCATCACGGCGAGTA < 2:1228842/150‑1 C‑TCCGAGGAAGCCGGAAAGTACAGTGACGGGCAGCCGCGCGGCTTCGTTGGTATGGGGGGCAGGGGTGCTCATCGGGAAGCTTCATGATAAAGGGTGGTGCGCATGCGTGCGGCTCTGCTCAGTCCTCGCCTGCATCACGGCGAGTACAG < 1:994698/150‑1 TCCGAGGAAGCCGGAAAGTACAGTGACGGGCAGCCGCGCGGCTTCGTTGGTATGGGGGGCAGGGGTGCTCATCGGGAAGCTTCATGATAAAGGGTGGTGCGCATGCGTGCGGCTCTGCTCAGTCCTCGCCTGCATCACGGCGAGTACAGG < 1:2015100/150‑1 GTAAATGCGCCGCCTGTACTCGCCGTGATGCAGGCGAGGACTGAGCAGAGCCGCACGCATGCGCACCACCCTTTATCATGAAGCTTCCCGATGAGCACCCCTGCCCCCCATACCAACGAAGCCGCGCGGCTGCCCGTCACTGTACTTTCCGGC‑T‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3758689‑3758842‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggc‑tCCGAGGAAGCCGGAAAGTACAGTGACGGGCAGCCGCGCGGCTTCGTTGGTATGGGGGGCAGGGGTGCTCATCGGGAAGCTTCATGATAAAGGGTGGTGCGCATGCGTGCGGCTCTGCTCAGTCCTCGCCTGCATCACGGCGAGTACAGG < NC_002947/3758849‑3758701 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |