| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3768425 = | 85 (0.960) | 5 (0.060) | 5/238 | NT | 5.9% | intergenic (+7/‑32) | PP_5600/PP_3330 | hypothetical protein/ferric siderophore receptor |
| ? | NC_002947 | 3768460 = | 76 (0.890) | coding (4/2187 nt) | PP_3330 | ferric siderophore receptor | |||||
TGGCCGGCAGGGTCAGGGTGTCATCCTGCGCCCAGGCACAGGTTGCGCTGCCAACGAGCAGCGCCAAAGTGGTCATGCGGAACATGCAAGGCTTCCTGGCTGAAATCGGTGAGCACACGCCCGCTGCCGATCAGGCGGCACGGGGACGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3768574‑3768425‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgTGCTCACCGATTTCAGCCAGGAAGCCTTGCATGTTCCGCATGACCACTTTGGCGCTGCTCGTTGGCAGCGCAACCTGTGCCTGGGCGCAGGATGACACCCTGACCCTGCCGGCCAGCAATGTCACGGCCACAGCCAATCAACCCAAGG > NC_002947/3768460‑3768607 TGGCCGGCAGGGTCAGGGTGTCATCCTGCGCCCAGGCACAGGTTGCGCTGCCAACGAGCAGCGCCAAAGTGGTCATGCGGAACATGCAAGGCTTCCTGGCTGAAATCGGTGAGCACACGCCCGCTGCCGATCAGGCGGCACGGGGACGTG > 1:609556/1‑150TGGCCGGCAGGGTCAGGGTGTCATCCTGCGCCCAGGCACAGGTTGCGCTGCCAACGAGCAGCGCCAAAGTGGTCATGCGGAACATGCAAGGCTTCCTGGCTGAAATCGGTGAGCACACGCCCGCTGCCGATCAGGCGGCACGGGGACGTG > 2:525347/1‑150 CACACGCCCGCTGCCGATCAGGCGGCACGGGGACGTGTGCTCACCGATTTCAGCCAGGAAGCCTTGCATGTTCCGCATGACCACTTTGGCGCTGCTCGTTGGCAGCGCAACCTGTGCCTGGGCGCAGGATGACACC < 1:779769/136‑1 CACACGCCCGCTGCCGATCAGGCGGCACGGGGACGTGTGCTCACCGATTTCAGCCAGGAAGCCTTGCATGTTCCGCATGACCACTTTGGCGCTGCTCGTTGGCAGCGCAACCTGTGCCTGGGCGCAGGATGACACC > 2:779769/1‑136 GCCCGCTGCCGATCAGGCGGCACGGGGACGTGTGCTCACCGATTTCAGCCAGGAAGCCTTGCATGTTCCGCATGACCACTTTGGCGCTGCTCGTTGGCAGCGCAACCTGTGCCTGGGCGCAGGATGACACCCTGACCCTGCCGGCCAGCA > 2:1947362/1‑150 TGCCGATCAGGCGGCACGGGGACGTGTGCTCACCGATTTCAGCCAGGAAGCCTTGCATGTTCCGCATGACCACTTTGGCGCTGCTCGTTGGCAGCGCAACCTGT > 1:2024670/1‑104 TGCCGATCAGGCGGCACGGGGACGTGTGCTCACCGATTTCAGCCAGGAAGCCTTGCATGTTCCGCATGACCACTTTGGCGCTGCTCGTTGGCAGCGCAACCTGT < 2:2024670/104‑1 GGGACGTGTGCTCACCGATTTCAGCCAGGAAGCCTTGCATGTTCCGCATGACCACTTTGGCGCTGCTCGTTGGCAGCGCAACCTGTGCCTGGGCGCAGGATGACACCCTGACCCTGCCGGCCAGCAATGTCACGGCCACAGCCAATCAAC < 1:1947362/150‑1 TGTGCTCACCGATTTCAGCCAGGAAGCCTTGCATGTTCCGCATGACCACTTTGGCGATGCTCGTTGGCAGCGAAAGTTGTGCCGGGGCGCAGGATGACACCCTGACCCTGCCGGCCAGCAATGTCACGGCCACAGCCAATCAACCCAAGG > 1:2098596/1‑150 TGGCCGGCAGGGTCAGGGTGTCATCCTGCGCCCAGGCACAGGTTGCGCTGCCAACGAGCAGCGCCAAAGTGGTCATGCGGAACATGCAAGGCTTCCTGGCTGAAATCGGTGAGCACACGCCCGCTGCCGATCAGGCGGCACGGGGACGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3768574‑3768425‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgTGCTCACCGATTTCAGCCAGGAAGCCTTGCATGTTCCGCATGACCACTTTGGCGCTGCTCGTTGGCAGCGCAACCTGTGCCTGGGCGCAGGATGACACCCTGACCCTGCCGGCCAGCAATGTCACGGCCACAGCCAATCAACCCAAGG > NC_002947/3768460‑3768607 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |