| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3775460 = | 71 (0.800) | 8 (0.100) | 6/234 | NT | 11.0% | coding (60/453 nt) | PP_3336 | hypothetical protein |
| ? | NC_002947 | 3775487 = | 62 (0.740) | coding (33/453 nt) | PP_3336 | hypothetical protein | |||||
GCCTAGGCGCCGTGGCGGGCCTGTGCCTGCCATTAACACGCCGGATTCACGGTGCATGCTCAGGTATGCGCCTGCCGGTTGGTTTGACCGTCGTTGGAGAGAAGCCCTCATGACCTGTCGAATCTCCACGCCCGCGCTACCTGGCGAGGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3775612‑3775460‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtgGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCATGCACCGTGAATCCGGCGTGTTAATGGCAGGCACAGGCCCGCCACGGCGCCTAGGCGCAGGTAGCGTCAGAGAGG > NC_002947/3775487‑3775631 GCCTAGGCGCCGTGTCTGTCCTTTGCCTGCCATTAACACGCCGGATTCACGGTGCATGCTCAGGTATGCGCCTGCCGGTTGGTTTGACCGTCGTTGGAGAGAAGCCCTCATGACCTGTCGAATCTCCACGCCCGCGCTACCTGCCGAGGC < 2:991524/150‑1GCCTAGGCGCCGTGGCGGGCCTGTGCCTGCCATTAACACGCCGGATTCACGGTGCATGCTCAGGTATGCGCCTGCCGGTTGGTTTGACCGTCGTTGGAGAGAAGCCCTCATGACCTGTCGAATCTCCACGCCCGCGCTACCTGGCGAGGC > 2:605096/1‑150 CTAGGCGCCGTGGCGGGCCTGTGCCTGCCATTAACACGCCGGATTCACGGTGCATGCTCAGGTATGCGCCTGCCGGTTGGTTTGACCGTCGTTGGAGAGAAGCCCTCATGACCTGTCGAATCTCCACGCCCGCGCTACCTGGCGAGGCGT < 1:1866699/150‑1 TGCCTGCCATTAACACGCCGGATTCACGGTGCATGCTCAGGTATGCGCCTGCCGGTTGGTTTGACCGTCGTTGGAGAGAAGCCCTCATGACCTGTCGAATCTCCACGCCCGCGCTACCTGGCGAGGC < 2:594183/127‑1 TGCCTGCCATTAACACGCCGGATTCACGGTGCATGCTCAGGTATGCGCCTGCCGGTTGGTTTGACCGTCGTTGGAGAGAAGCCCTCATGACCTGTCGAATCTCCACGCCCGCGCTACCTGGCGAGGC > 1:594183/1‑127 GTTGGAGAGAAGCCCTCATGACCTGTCGAATCTCCACGCCCGCGCTACCTGGCGAGGCGT < 1:1280121/60‑1 GTTGGAGAGAAGCCCTCATGACCTGTCGAATCTCCACGCCCGCGCTACCTGGCGAGGCGT > 2:1280121/1‑60 CTCCACGCCCGCGCTACCTGGCGAGGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCATGCACCGTGAATCCGGCGTGTTAATGGCAGGCACAGGCCCGCCACGGCGC > 1:731756/1‑150 CCACGCCCGCGCTACCTGGCGAGGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCAT < 1:2084355/99‑1 CCACGCCCGCGCTACCTGGCGAGGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCAT > 2:2084355/1‑99 CACGCCCGCGCTACCTGGCGAGGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCATGCACCGTGAATCCGGCGTGTTAATGGCAGGCACAGGCCCGCCACGGCGCCTA > 1:363415/1‑150 CACGCCCGCGCTACCTGGCGAGGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCAT < 1:449/88‑1 CACGCCCGCGCTACCTGGCGAGGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCAT > 2:449/1‑88 CACGCCCGCGCTACCTGGCGAGGCGTGGAGATTCGACAGGGCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCATGCACCGTGAATCCGGCGTGTTAATGGCAGGCACAGGCCCGCCACGGCGCCTA > 1:1325868/1‑150 ACGCCCGCGCTACCTGGCGAGGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCATGCACCGTGAATCCGGCGTGTTAATGGCAGGCACAGGCCCGCCACGGCGCCTAG > 2:1805385/1‑150 GGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCATGCACCGTGAATCCGGCGTGTTAATGGCAGGCACAGGCCCGCCACGGCGCCTAGGCGCAGGTAGCGTCAGAGAG < 2:1866699/150‑1 GGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCATGCACCGTGAATCCGGCGTGTTAATGGCAGGCACAGGCCCGCCACGGCGCCTAGGCGCAGGTAGCGTCAGAGAG < 1:1517278/150‑1 GCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCATGCACCGTGAATCCGGCGTGTTAATGGCAGGCACAGGCCCGCCACGGCGCCTAGGCGCAGGTAGCGTCAGAGAGG < 1:2002604/150‑1 TGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCATGCACCGTGAATCCGGCGTGTTAATGG < 1:2069483/99‑1 TGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGA > 1:846580/1‑69 TGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGA < 2:846580/69‑1 TGGAGATTCGACAGGGCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCATGCACCGTGAATCCGGCGTGTTAATGG > 2:2069483/1‑99 GCCTAGGCGCCGTGGCGGGCCTGTGCCTGCCATTAACACGCCGGATTCACGGTGCATGCTCAGGTATGCGCCTGCCGGTTGGTTTGACCGTCGTTGGAGAGAAGCCCTCATGACCTGTCGAATCTCCACGCCCGCGCTACCTGGCGAGGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3775612‑3775460‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtgGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCATGCACCGTGAATCCGGCGTGTTAATGGCAGGCACAGGCCCGCCACGGCGCCTAGGCGCAGGTAGCGTCAGAGAGG > NC_002947/3775487‑3775631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |