| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3883664 | 98 (1.110) | 6 (0.070) | 6/228 | NT | 5.7% | coding (639/1056 nt) | PP_3428 | TPR repeat‑containing protein |
| ? | NC_002947 | = 3883685 | 106 (1.290) | coding (660/1056 nt) | PP_3428 | TPR repeat‑containing protein | |||||
TGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGCCGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3883507‑3883664‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctggcgCTCGAGCAGGCGTACCTGAGTCGCCAGGGCATCGAGGTTGCCGGGGGCAACCGCGAGCGCTCGCTGCAGGGCTGCAGCGGCGTGCGTGTAGTCGTTTTCGTGCAGGTACAGGCGCGCCAGGTGCACTTGGGCGTCGGCATCTTCAGGCT < NC_002947/3883685‑3883537 TGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGCCGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATG > 2:232186/1‑150 GCAATACCAGCAAGCCGTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACCCGCACGCCGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCT < 2:423929/150‑1 TACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGCCGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCG > 1:1857765/1‑150 TACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGCCGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCG > 2:1970255/1‑150 TACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGCCGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCG > 1:470774/1‑150 TACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACCCCGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCG > 1:897352/1‑150 GCGCCTGTCGCTGCACGAAAACGACTACACGCACGCCGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGAGGCCCTGGCGCTCGAGCAGGCGTACCTGAGTCGCCAGG < 1:737465/122‑1 GCGCCTGTACCTGCACGAAAACGACTACACGCACGCCGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGAGGCCCTGGCGCTCGAGCAGGCGTACCTGAGTCGCCAGG > 2:737465/1‑122 CACGAAAACGACTACACGCACGCCGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGCTCGAGCAGGCGTACCTGAGTCGCCAG > 2:2009664/1‑108 CACGAAAACGACTACACGCACGCCGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGCTCGAGCAGGCGTACCTGAGTCGCCAG < 1:2009664/108‑1 AACGACTACACGCACGCCGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGCTCGAGCAGGCGTACCTGAGTCGCCA > 2:1392537/1‑101 AACGACTACACGCACGCCGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGCTCGAGCAGGCGTACCTGAGTCGCCA < 1:1392537/101‑1 CCTGGCGCTCGAGCAGGCGTACCTGAGTCGCCAGGGCATCGAGGCTGCCGGGGGCAACCGCGAGCGCTCGCTGCAGGGCTGCAGCGGCGTGCGTGTAGTCGTTTTCGTGCAGGTACAGGCGCGCCAGGTGCACTTGGGCGTCGGCATCTT > 2:941910/1‑150 CTGGCGCTCGAGCAGGCGTACCTGAGTCGCCAGGGCATCGAGGTTGCC‑GGGGCAACCGCGAGCGCTCGCTGCAGGGCTGCAGCGGCGTGCGTGTAGTCGTTTTCGTGCAGGTACAGGCGCGCCAGGTGCACTTGGGCGTCGGCATCTTCA > 2:2285660/1‑150 GCGCTCGAGCAGGCGTACCTGAGTCGCCAGGGCATCGAGGTTGCCGGGGGCAACCGCGAGCGCTCGCTGCAGGGCTGCAGCGGCGTGCGTGTAGTCGTTTTCGTGCAGGTACAGGCGCGCCAGGTGCACTTGGGCGTCGGCATCTTCAGG < 2:1512487/150‑1 GCGCTCGAGCAGGCGTACCTGAGTCGCCAGGGCATCGAGGTTGCCGGGGGCAACCGCGAGCGCTCGCTGCAGGGCTGCAGCGGCGTGCGTGTAGTCGTTTTCGTGCAGGTACAGGCGCGCCAG < 1:672450/123‑1 GCGCTCGAGCAGGCGTACCTGAGTCGCCAGGGCATCGAGGTTGCCGGGGGCAACCGCGAGCGCTCGCTGCAGGGCTGCAGCGGCGTGCGTGTAGTCGTTTTCGTGCAGGTACAGGCGCGCCAG > 2:672450/1‑123 GCTCGAGCAGGCGTACCTGAGTCGCCAGGGCATCGAGGTTGCCGGGGGCAACCGCGAGCGCTCGCTGCAGGGCTGCAGCGGCGTGCGTGTAGTCGTTTTCGTGCAGGTACAGGCGCGCCAGGTGCACTTGGGCGTCGGCATCTTCAGGCT > 2:897352/1‑150 GCTCGAGCAGGCGTACCTGAGTCGCCAGGGCATCGAGGTTGCCGGGGGCAACCGCGAGAGCTCGCTGCAGGGCTGCAGCGGCGTGCGTGTAGTCGTTTTCGTGCAGGTACAGGCGCGCCAGGTGCACTT < 1:465394/129‑1 GCTCGAGCAGGCGTACCTGAGTCGCCAGGGCATCGAGGTTGCCGGGGGCAACCGCGAGAGCTCGCTGCAGGGCTGCAGCGGCGTGCGTGTAGTCGTTTTCGTGCAGGTACAGGCGCGCCAGGTGCACTT > 2:465394/1‑129 TGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGCCGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3883507‑3883664‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctggcgCTCGAGCAGGCGTACCTGAGTCGCCAGGGCATCGAGGTTGCCGGGGGCAACCGCGAGCGCTCGCTGCAGGGCTGCAGCGGCGTGCGTGTAGTCGTTTTCGTGCAGGTACAGGCGCGCCAGGTGCACTTGGGCGTCGGCATCTTCAGGCT < NC_002947/3883685‑3883537 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |