| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3963032 | 61 (0.690) | 4 (0.050) | 4/224 | NT | 6.6% | intergenic (+34/+83) | PP_3492/PP_3493 | acyl‑CoA dehydrogenase/LysR family transcriptional regulator |
| ? | NC_002947 | = 3963072 | 57 (0.710) | intergenic (+74/+43) | PP_3492/PP_3493 | acyl‑CoA dehydrogenase/LysR family transcriptional regulator | |||||
TGGAAGATTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3962880‑3963032‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcgCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCTCGCTCGACCCTTCATAGATCTGG < NC_002947/3963072‑3962926 aGGAAGATTAGCCGTTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGG > 2:1199522/2‑150TGGAAGATTACCCGGTGGAGCGCTATTACCGGGATGCACGGATTACCCAGATCTATGAAGGTTCGAACGAGATCCAGCAGATGCTGATTGCGCCGGCATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGacagcag > 2:570190/1‑143 CCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGC > 1:1341992/1‑150 TATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCA < 1:161598/134‑1 TATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCA > 2:161598/1‑134 TGAGGGGTGGAGCGAGTTCCAGGCGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCC < 2:1341992/150‑1 GGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCTCGCTCGACCCTTCA > 2:1514531/1‑150 GGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCGCGCTCGACCCTTCAT > 2:1680636/1‑150 GAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGGCGCCCGCTCCCCCAAAAACCGCGATGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCTGGCTCGACCCTTCATcg > 2:926852/1‑148 CGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGAGTTTTCTTTTCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCTCGCTCGACCCTTCATAGATC > 2:205004/1‑150 GGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTT > 1:286453/1‑96 GGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTT < 2:286453/96‑1 GCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCATCATCCGCTTGATCTCGCTCGACCCTTCATAGATCTGG < 2:1480946/150‑1 GCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCTCGCTCGACCCTTCATAGATCTGG < 2:1033736/150‑1 GCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCTCGCTCGACCCTTCATAGATCTGG < 2:1883177/150‑1 GCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCTCGCTCGACCCTTCATAGATCTGG < 2:220624/150‑1 GCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCTCGCTCGACCCTTCATAGATCTGG < 1:2387921/150‑1 GCGCGCCCGCAAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCTCGCTCGACCCTTCATAGATCTGG < 2:1809308/150‑1 TGGAAGATTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3962880‑3963032‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcgCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAAAAACCGCGTTGCCTTTGCGTTACAGCGGATAGTTTTTCAATTCCCGCGCAATCAGCATCCGCTGGATCTCGCTCGACCCTTCATAGATCTGG < NC_002947/3963072‑3962926 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |