New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4048216	84 (0.950)	8 (0.090)	7/238	NT	8.6%	coding (723/2418 nt)	quiA	quinate dehydrogenase
	?	NC_002947	= 4048234	89 (1.040)					coding (741/2418 nt)	quiA	quinate dehydrogenase

CGGGACAACGTCAACAAGCTGAAAGTGGCCTGGACCTACCAAACCGGCGACGTTGCAATCAGTGACGGCAACGGTGCCGAAGACCAGCTCACCCCGCTGCAGATCGGCAGCAAGGTGTTCATCTGCACCCCGCACAACAACCTGATCGCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4048064‑4048216 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actcTTTGCCGGTGTCGGCATCGAGTGCGATCAGGTTGTTGTGCGGGGTGCAGATGAACACCTTGCTGCCGATCTGCAGCGGG  <  NC_002947/4048234‑4048156                                                                                                                                                                                                                                          CGGGACAACGTCAACAAGCTGAAAGTGGCCTGGACCTACCAAACCGGAGACGTTGCAATCAGTGACGGCAACGGTGCCGAAGACCAGCTCACCCCGCTGCAGATCGGCAGCAAGGTTTTCATCTGCACCCCGCACAACAACCTGATCGCA                                                                                    >  2:808080/1‑150  GGGACAACGTCAACAAGCTGAAAGTGGCCTGGACCTACCAAACCGGCGACGTTGCAATCAGTGACGGCAACGGTGCCGAAGACCAGCTCACCCCGCCGCATAGCGGCAGCAAGGTGTTCATCTGCACCCCGCACAACAACCTGATCGCAC                                                                                   >  1:2331518/1‑150    GACAACGTCAACAAGCTGAAAGTGGCCTGGACCTACCAAACCGGCGACGTTGCAATCAGTGACGGCAACGGTGCCGAAGACCAGCTCACCCCGCTGCAGATCGGCAGCAAGGTGTTCATCTGCACCCCGCACAACAACCTGATCGCACTC                                                                                 <  2:2277762/150‑1                                      ACCAAACCGGCGACGTTGCAATCAGTGACGGCAACGGTGCCGAAGACCAGCTCACCCCGCTGCAGATCGGCAGCAAGGTGTTCATCTGCACCCCGCACAACAACCTGATCGCACTCTTTGCCGGTGTCGGCATCGAGTGCGATCA                                                    >  1:368674/1‑145                                      ACCAAACCGGCGACGTTGCAATCAGTGACGGCAACGGTGCCGAAGACCAGCTCACCCCGCTGCAGATCGGCAGCAAGGTGTTCATCTGCACCCCGCACAACAACCTGATCGCACTCTTTGCCGGTGTCGGCATCGAGTGCGATCA                                                    <  2:368674/145‑1                                                                                    CCAGCTCACCCCGCTGCAGATCGGCAGCAAGGTGTTCATCTGCACCCCGCACAACAACCTGATCGCACTCTTTGCCGGTGTCGGCATCGAGTGCGATCA                                                    <  1:809505/99‑1                                                                                    CCAGCTCACCCCGCTGCAGATCGGCAGCAAGGTGTTCATCTGCACCCCGCACAACAACCTGATCGCACTCTTTGCCGGTGTCGGCATCGAGTGCGATCA                                                    >  2:809505/1‑99                                                                                                      GATCGGCAGCAAGGTGTTCATCTGCACCCCGCACAACAACCTGATCGCACTCTTTGCCGGTGTCGGCATCGA                                                             >  1:2205846/1‑72                                                                                                      GATCGGCAGCAAGGTGTTCATCTGCACCCCGCACAACAACCTGATCGCACTCTTTGCCGGTGTCGGCATCGA                                                             <  2:2205846/72‑1                                                                                                                           CTGCACCCCGCACAACAACCTGATCGCACTCTTTGCCGGTGTCGGCATCGAG                                                            <  1:1413856/52‑1                                                                                                                           CTGCACCCCGCACAACAACCTGATCGCACTCTTTGCCGGTGTCGGCATCGAG                                                            >  2:1413856/1‑52                                                                                                                                                       CTCTTTGCCGGTGTCGGCATCGAGTGCGATCAGGTTGTTGTGCGGGGTGCAGATGAACACCTTGCTGCCGATCTGCAGCGGG  <  1:875631/82‑1                                                                                                                                                       CTCTTTGCCGGTGTCGGCATCGAGTGCGATCAGGTTGTTGTGCGGGGTGCAGATGAACACCTTGCTGCCGATCTGCAGCGGG  >  2:875631/1‑82                                                                                                                                                                                                                                          CGGGACAACGTCAACAAGCTGAAAGTGGCCTGGACCTACCAAACCGGCGACGTTGCAATCAGTGACGGCAACGGTGCCGAAGACCAGCTCACCCCGCTGCAGATCGGCAGCAAGGTGTTCATCTGCACCCCGCACAACAACCTGATCGCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4048064‑4048216 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actcTTTGCCGGTGTCGGCATCGAGTGCGATCAGGTTGTTGTGCGGGGTGCAGATGAACACCTTGCTGCCGATCTGCAGCGGG  <  NC_002947/4048234‑4048156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.