New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4074198 =	NA (NA)	16 (0.190)	13/236	NT	NA	coding (1261/1329 nt)	PP_3586	transposase
	?	NC_002947	5223068 =	NA (NA)					coding (1277/1329 nt)	PP_4603	transposase

ATTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4074351‑4074198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  >  NC_002947/5223068‑5223216                                                                                                                                                                                                                                                                                                                      ATTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑A                                                                                                                                                           >  2:1113548/1‑150  TTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          <  1:2206370/150‑1     GCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCa                                                                                                                                                       <  2:603085/150‑2     GCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCCGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC                                                                                                                                                       >  1:2369158/1‑150            GCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAG                                                                                                                                                         <  2:1168135/141‑1            GCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAG                                                                                                                                                         >  1:1168135/1‑141                CGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCCCGGACCTGCCG                                                                                                                                            >  2:1018490/1‑150                          TGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTT                                                                                                                                  >  1:870412/1‑150                             CTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTG                                                                                                                                      >  2:221131/1‑148                             CTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTG                                                                                                                                      <  1:221131/148‑1                              TCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          >  2:1574226/1‑122                              TCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          <  1:1574226/122‑1                              TCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCCGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGACGAGTTCGAAG‑CA‑‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTCTGGct                                                                                                                            >  2:1735665/1‑148                                GAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGC                                                                                                                                                        >  2:233972/1‑122                                GAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGC                                                                                                                                                        <  1:233972/122‑1                                  ATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTC                                                                                                                          <  1:1018490/150‑1                                  ATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTC                                                                                                                          <  2:870412/150‑1                                   TGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCT                                                                                                                                >  1:798374/1‑148                                   TGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCT                                                                                                                                <  2:798374/148‑1                                   TGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGC                                                                                                                                                        <  2:552501/119‑1                                   TGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGC                                                                                                                                                        >  1:552501/1‑119                                   TGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAG‑CA‑‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAA                                                                                                                       <  1:1735665/150‑1                                     GATATCAGCGGCGCGTTTAAGGCCGCTGCGCATCAGTTGGCACGTCTGGTGTACGACCTGTTAACCAAGAAGCAGGCTTATGTTGGACAAGGTCTTGAGGAGTTCGAAACCAG‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAA                                                                                                                       <  2:361042/150‑1                                      ATACCAGGTACGTCATCAATACCACTGCGCATCAGTTGGCACGTCTGGTGTACAAGCTGTTAACCAAGAAGCAGGCTTATTTTGAACAAGGTCTTGAGGATTTCGAAACCAG‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAAC                                                                                                                      <  2:44911/150‑1                                          CAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTTGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          <  2:1288103/110‑1                                          CAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          >  1:1288103/1‑110                                                  CCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          <  2:503868/102‑1                                                  CCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          >  1:503868/1‑102                                                       AAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAG                                                                                                                                                         <  2:416082/98‑1                                                       AAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAG                                                                                                                                                         >  1:416082/1‑98                                                                    ATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          >  2:188639/1‑84                                                                    ATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          <  1:188639/84‑1                                                                                                      CAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTT                                                                                                                                  >  2:1542674/1‑79                                                                                                      CAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTT                                                                                                                                  <  1:1542674/79‑1                                                                                                                                 TCTTGAGGAGTTCGAAACCAG‑‑‑‑‑AAGCCAAGACCGGCAGGTCCGGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTG                                        >  1:2231531/1‑137                                                                                                                                 TCTTGAGGAGTTCGAAACCAG‑‑‑‑‑AAGCCAAGACCGGCAGGTCCGGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTG                                        <  2:2231531/137‑1                                                                                                                                                   CAG‑‑‑‑‑AAGCCAAGACCGGCAGGTCCGGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTG                                                                                  <  2:977759/77‑1                                                                                                                                                   CAG‑‑‑‑‑AAGCCAAGACCGGCAGGTCCGGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTG                                                                                  >  1:977759/1‑77                                                                                                                                                           AAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAG                                                                          <  2:203304/82‑1                                                                                                                                                           AAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAG                                                                          >  1:203304/1‑82                                                                                                                                                            AGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTTTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCAG     <  1:1351357/150‑1                                                                                                                                                            AGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCAG     >  1:2307448/1‑150                                                                                                                                                            AGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCAG     >  1:1067147/1‑150                                                                                                                                                            AGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTT                                                                               <  2:2223992/76‑1                                                                                                                                                            AGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTT                                                                               >  1:2223992/1‑76                                                                                                                                                              CCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCTCAGCTGGTATCCATTCGAGTCAGTC   >  1:1110022/1‑150                                                                                                                                                               CCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCATTCT  <  2:1696980/150‑1                                                                                                                                                               CCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  <  2:887469/150‑1                                                                                                                                                                                                                                                                                                                      ATTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4074351‑4074198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  >  NC_002947/5223068‑5223216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.