| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4395254 = | 85 (0.960) | 4 (0.050) | 4/232 | NT | 5.2% | coding (564/594 nt) | PP_3871 | hypothetical protein |
| ? | NC_002947 | 4395288 = | 67 (0.800) | coding (530/594 nt) | PP_3871 | hypothetical protein | |||||
GGCCGCAACCGCGGCAGTGAGCCCGCCGAAACCTGGCATGAATACGAGCTTGATGGCCTGCCGCCGCTGAAGGGCATCGACTTCAGCCTGGACAGCCTGGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4395406‑4395254‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaagtgTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCATGCCAGGTTTCGGCGGGCTCACTGCCGCGGT > NC_002947/4395288‑4395399 GGCCGCAACCGCGGCAGTGAGCCCGCCGAAACCTGGCATGAATACGAGCTTGATGGCCTGCCGCCGCTGAAGGGCATCGACTTCAGCCTGGACAGCCTGGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAA < 2:303558/150‑1 GCCGCAACCGCGGCAGTGAGCCCGCCGAAACCTGGCATGAATACGAGCTTGATGGCCTGCCGCCGCTGAAGGGCATCGACTTCAGCCTGGACAGCCTGGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAG > 1:1276437/1‑150 GCCGCAACCGCGGCAGTGAGCCCGCCGAAACCTGGCATGAATACGAGCTTGATGGCCTGCCGCCGCTGAAGGGCATCGACTTCAGCCTGGACAGCCTGGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTC < 1:2357749/146‑1 GCCGCAACCGCGGCAGTGAGCCCGCCGAAACCTGGCATGAATACGAGCTTGATGGCCTGCCGCCGCTGAAGGGCATCGACTTCAGCCTGGACAGCCTGGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTC > 2:2357749/1‑146 CCGCAACCGCGGCAGTGAGCCCGCCGAAACCTGGCATGAATACGAGCTTGATGGCCTGCCGCCGCTGAAGGGCATCGACTTCAGCCTGGACAGCCTGGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAGT > 1:1947586/1‑150 CGCAACCGCGGCAGTGAGCCCGCCGAAACCTGGCATGAATACGAGCTTGATGGCCTGCCGCCGCTGAAGGGCATCGACTTCAGCCTGGACAGCCTGGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAGTG > 2:1534388/1‑150 CTGAAGGGCATCGACTTCAGCCTGGACAGCCTGGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAG > 1:1432847/1‑85 CTGAAGGGCATCGACTTCAGCCTGGACAGCCTGGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAG < 2:1432847/85‑1 GGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAA > 1:1518893/1‑52 GGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAA < 2:1518893/52‑1 CCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCA < 1:1776323/73‑1 CCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCA > 2:1776323/1‑73 GCCTGGGCCTGATGGCCGGGTCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCC < 1:213010/76‑1 GCCTGGGCCTGATGGCCGGGTCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCC > 2:213010/1‑76 TGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCATGCCAGGTTTCGGCGGGCTCACTGCCGCaac > 1:136641/1‑111 TGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCATGCCAGGTTTCGGCGGGCTCACTGCCGCaac < 2:136641/114‑4 GGCCGCAACCGCGGCAGTGAGCCCGCCGAAACCTGGCATGAATACGAGCTTGATGGCCTGCCGCCGCTGAAGGGCATCGACTTCAGCCTGGACAGCCTGGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4395406‑4395254‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaagtgTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCATGCCAGGTTTCGGCGGGCTCACTGCCGCGGT > NC_002947/4395288‑4395399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |