| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4481903 | 80 (0.900) | 10 (0.120) | 8/226 | NT | 11.4% | intergenic (+402/‑136) | PP_3972/PP_3974 | short‑chain dehydrogenase/reductase family oxidoreductase/LysR family transcriptional regulator |
| ? | NC_002947 | = 4481911 | 82 (1.010) | intergenic (+410/‑128) | PP_3972/PP_3974 | short‑chain dehydrogenase/reductase family oxidoreductase/LysR family transcriptional regulator | |||||
CACCACATCGAGGAAGAAGAAGGCGAACTCTTCCCGACGGCCAAAAAGCTTCTTGGCAAGGACGTGCTGGAACAGCTTGGGCAAACCATGGAAGCCCAGAAAAAGATGCTCAAGGGCGAGCAGCGGGCCGCCTGACAAGGCCATTCCCTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4481750‑4481903‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccctgccagCCGTGGCACTGGCAGGGAATGGCCTTGTCAGGCGGCCCGCTGCTCGCCCTTGAGCATCTTTTTCTGGGCTTCCATGGTTTGCCCAAGCTGTTCCAGCACGTCCTTGCCAAGAAGCTTTTTGGCCGTCGGGAAGAGTTCGCCTTCTTCT < NC_002947/4481911‑4481764 CACCACATCGAGGAAGAAGAAGGCGAACTCTTCCCGACGGCCAAAAAGCTTCTTGGCAAGGACGTGCTGGAACAGCTTGGGCAAACCATGGAAGCCCAGAAAAAGATGCTCAAGGGCGAGCAGCGGGCCGCCTGACAAGGCCATTCCCTG > 1:1342440/1‑150 CACATCGAGGAAGAAGAAGGCGAACTCTTCCCGACGGCCAAAAAGCTTCTTGGCAAGGACGTGCTGGAACAGCTTGGGCAAACCATGGAAGCCCAGAAAAAGATGCTCAAGGGCGAGCAGCGGGCCGCCTGACAAGGCCATTCCCTGCCA < 2:2197579/150‑1 AGGCGAACTCTTCCCGACGGCCAAAAAGCTTCTTGGCCCATTCGTGCTGGAACAGCTTGGGCAAACCATGGAAGCCCAGAAAAAGATGCTCAAGGGCGAGCAGCGGGCCGCCTGACAAGGCCATTCCCTGCCAGCCGTGGCACTGGCAGG < 1:1330415/150‑1 GAACTCTTCCCGACGGCCAAAAAGCTTCTTGGCAAGGACGTGCTGGAACAGCTTGGGCAAACCATGGAAGCCCAGAAAAAGATGCTCAAGGGCGAGCAGCGGGCCGCCTGACAAGGCCATTCCCTGCCAGCCGTGGCACTGGCAGGGAAT < 2:466286/150‑1 GCTTCTTGGCAAGGACGTGCTGGAACAGCTTGGGCAAACCATGGAAGCCCAGAAAAAGATGCTCAAGGGCGAGCAGCGGGCCGCCTGACAAGGCCATTCCCT < 1:1912650/102‑1 GCTTCTTGGCAAGGACGTGCTGGAACAGCTTGGGCAAACCATGGAAGCCCAGAAAAAGATGCTCAAGGGCGAGCAGCGGGCCGCCTGACAAGGCCATTCCCT > 2:1912650/1‑102 GAACAGCTTGGGCAAACCATGGAAGCCCAGAAAAAGATGCTCAAGGGCGAGCAGCGGGCCGCCTGACAAGGCCATTCCCTGCCAGCCGTGGCACTGGCAGGGAATGGC > 1:2375350/1‑108 GAACAGCTTGGGCAAACCATGGAAGCCCAGAAAAAGATGCTCAAGGGCGAGCAGCGGGCCGCCTGACAAGGCCATTCCCTGCCAGCCGTGGCACTGGCAGGGAATGGC < 2:2375350/108‑1 AAACCATGGAAGCCCAGAAAAAGATGCTCAAGGGCGAGCAGCGGGCCGCCTGACAAGGCCATTCCCTGCCAGCCGTGGCACTGGCAGGGAAT < 2:415895/92‑1 AAACCATGGAAGCCCAGAAAAAGATGCTCAAGGGCGAGCAGCGGGCCGCCTGACAAGGCCATTCCCTGCCAGCCGTGGCACTGGCAGGGAAT > 1:415895/1‑92 CTCAAGGGCGAGCAGCGGGCCGCCTGACAAGGCCATTCCCTGCCAGCCGTGGCACTGGCAGG < 1:1278851/62‑1 CTCAAGGGCGAGCAGCGGGCCGCCTGACAAGGCCATTCCCTGCCAGCCGTGGCACTGGCAGG > 2:1278851/1‑62 TGACAAGGCCATTCCCTGCCAGCCGTGGCACTGGCAGGGAATGGCCTTGTCAGGCGGCCCGCTGCTCGCCCTTGAGCATCTTTTTCTGGGCTTCCATGGTTTGCCCAAGCTGTTCCAGCACGTCCTTGCCCAGAAGCTTTTTGGCCGTCG > 2:584214/1‑150 AAGGCCATTCCCTGCCAGCCGTGGCACTGGCAGGGAATGGCCTTGTCAGGCGGCCCGCTGCTCGCCCTTGAGCATCTTTTTCTGGGCTTCCATGGTTTGCCCAAGCTGTTCCAGCACGTCCTTGCCAAGAAGCTTTTCGTCCGTCGGGAA < 1:584214/150‑1 TCCCTGCCAGCCGTGGCACTGGCAGGGAATGGCCTTGTCAGGCGGCCCGCTGCTCGCCCTTGAGCATCTTTTTCTGGGCTTCCATGGTTTGCCCAAGCTGTTCCAGCACGTCCTTGCCAAGAAGCTTTTTGGCCGTCGGGAAGAGTTCGC > 2:1081463/1‑150 CCTGCCAGCCGTGGCACTGGCAGGGAATGGCCTTGTCAGGCGGCCCGCTGCTCGCCCTTGAGCATCTTTTTCTGGGCTTCCATGGTTTGCCCAAGCTGT < 2:1506749/99‑1 CCTGCCAGCCGTGGCACTGGCAGGGAATGGCCTTGTCAGGCGGCCCGCTGCTCGCCCTTGAGCATCTTTTTCTGGGCTTCCATGGTTTGCCCAAGCTGT > 1:1506749/1‑99 TGCCAGCCGTGGCACTGGCAGGGAATGGCCTTGTCAGGCGGCCCGCTGCTCGCCCTTGAGCATCTTTTTCTGGGCTTCCATGGTTTGCCCAAGCTGTTCCAGCACGTCCTTGCCAAGAAGCTTTTTGGCCGTCGGGAAGAGTTCGCCTTC < 1:1081463/150‑1 CCAGCCGTGGCACTGGCAGGGAATGGCCTTGTCAGGCGGCCCGCTGCTCGCCCTTGAGCATCTTTTTCTGGGCTTCCATGGTTTGCCCAAGCTGTTCCAGCACGTCCTTGCCAAGAAGCTTTTTGGCCGTCGGGAAGAGTTCGCCTTCTT > 2:1874921/1‑150 CCAGCCGTGGCACTGGCAGGGAATGGCCTTGTCAGGCGGCCCGCTGCTCG‑CCTTGAGCATCTTTTTCTGGGCTTCCATGGTTTGCCCAAGCTGTTCCAGCACGTCCTTGCCAAGAAGCTTTTTGGCCGTCGGGAAGAGTTCGCCTTCTTC > 2:1906094/1‑150 CAGCCGTGGCACTGGCAGGGAATGGCCTTGTCAGGCGGCCCGCTGCTCG‑CCTTGAGCATCTTTTTCTGGGCTTCCATGGTTTGCCCAAGCTGTTCCAGCACGTCCTTGCCAAGAAGCTTTTTGGCCGTCGGGAAGAGTTCGCCTTCTTCT < 1:1906094/150‑1 CACCACATCGAGGAAGAAGAAGGCGAACTCTTCCCGACGGCCAAAAAGCTTCTTGGCAAGGACGTGCTGGAACAGCTTGGGCAAACCATGGAAGCCCAGAAAAAGATGCTCAAGGGCGAGCAGCGGGCCGCCTGACAAGGCCATTCCCTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4481750‑4481903‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccctgccagCCGTGGCACTGGCAGGGAATGGCCTTGTCAGGCGGCCCGCTGCTCGCCCTTGAGCATCTTTTTCTGGGCTTCCATGGTTTGCCCAAGCTGTTCCAGCACGTCCTTGCCAAGAAGCTTTTTGGCCGTCGGGAAGAGTTCGCCTTCTTCT < NC_002947/4481911‑4481764 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |