New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4569256	99 (1.120)	5 (0.060)	5/234	NT	5.2%	coding (1142/2070 nt)	malQ	4‑alpha‑glucanotransferase
	?	NC_002947	= 4569279	88 (1.050)					coding (1165/2070 nt)	malQ	4‑alpha‑glucanotransferase

CCCTACCACCCGGAAGTGGAGGCTTTAGCCAATGCCTACCCGGCCAAGGTCGAGTTCCGCGCCTTCTGCCAGTGGCTGACTGAACGTGGCCTGCAACGTGCCCACGAAGCGGCCCGCAGCAACGGCATGGCCGTGGGCCTGATCGCCGACCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4569102‑4569256 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggcTGCCGGCACCATCGGCGCCCACCGCCAGGTCGGCGATCAGGCCCACGGCCATGCCGTTGCTGCGGGCCGCTTCGTGGGCACGTTGCAGGCCACGTTCAGTCAGCCACTGGCAGAAGGCGCGGAACTCGACCTTGGCCGGGTAGGCATTG  <  NC_002947/4569279‑4569131                                                                                                                                                                                                                                                                                                                  CCCTACCACCCGGAAGTGGAGGCTTTAGCCAATGCCTACCCGGCCAAGGTCGAGTTGCGCGCCTTCTGCCAGTGGCTGACTGAACGTGGCCTGCAACGTGCCCACGAAGCGGCCCGCAGCAACGGCATGGCCGTGGGCCTGATCGCCGAC                                                                                                                                                            >  2:1563824/1‑150 CCCTACCACCCGGAAGTGGAGGCTTTAGCCAATGCCTACCCGGCCAAGGTCGAGTTCCGCGCCTTCTGCCAGTGGCTGACTGAACGTGGCCTGCAACGTGCCCACGAAGCGGCCCGCAGCAACGGCATGGCCGTGGGCCTGATCGCCGAC                                                                                                                                                            <  1:1563824/150‑1 CCCTACCACCCGGAAGTGGAGGCTTTAGCCAATGCCTACCCGGCCAAGGTCGAGTTCCGCGCCTTCTGCCAGTGGCTGACTGAACGTGGCCTGCAACGTGCCCACGAAGCGGCCCGCAGCAACGGCATGGCCGTGGGCCTGATCGCCGAC                                                                                                                                                            >  2:2360479/1‑150     ACCACCCGGAAGTGGAGGCTTTAGCCAATGCCTACCCGGCCAAGGTCGAGTTCCGCGCCTTCTGCCAGTGGCTGACTGAACGTGGCCTGCAACGTGCCCACGAAGCGGCCCGCAGCAACGGCATGGCCGTGGGCCTGATCGCCGACCTGG                                                                                                                                                        <  2:1382875/150‑1                                      ACCCGGCCAAGGTCGAGTTCCGCGCCTTCTGCCAGTGGCTGACTGAACGTGGCCTGCAACGTGCCCACGAAGCGGCCCGCAGCAACGGCATGGCCGTGGGCCTGATCGCCGACCTGGCTGCCGGCACCATCGGCGCCCACCGCCAGGTCG                                                                                                                       <  2:248763/150‑1                                                       TTCCGCGCCTTCTGCCAGTGGCTGACTGAACGTGGCCTGCAACGTGCCCACGAAGCGGCCCGCAGCAACGGCATGGCCGTGGGCCTGATCGCCGACCTGGCTGCCGGCACCATCGGCGCCCACCGCCAGGTCGGCGATCAGG                                                                                                              >  1:2017310/1‑142                                                       TTCCGCGCCTTCTGCCAGTGGCTGACTGAACGTGGCCTGCAACGTGCCCACGAAGCGGCCCGCAGCAACGGCATGGCCGTGGGCCTGATCGCCGACCTGGCTGCCGGCACCATCGGCGCCCACCGCCAGGTCGGCGATCAGG                                                                                                              <  2:2017310/142‑1                                                                               ACTGAACGTGGCCTGCAACGTGCCCACGAAGCGGCCCGCAGCAACGGCATGGCCGTGGGCCTGATCGCCGACCTGGCTGCCGGCACCATCGGCGCCCACCGCCAG                                                                                                                           <  1:908709/105‑1                                                                               ACTGAACGTGGCCTGCAACGTGCCCACGAAGCGGCCCGCAGCAACGGCATGGCCGTGGGCCTGATCGCCGACCTGGCTGCCGGCACCATCGGCGCCCACCGCCAG                                                                                                                           >  2:908709/1‑105                                                                                                                                                    GACCTGGCTGCCGGCACCATCGGCGCCCACCGCCAGGTCGGCGATCAGGCCCACGGCCATGCCGTTGCTGCGGGCCGCTTCGTG                                                                           >  1:648291/1‑84                                                                                                                                                    GACCTGGCTGCCGGCACCATCGGCGCCCACCGCCAGGTCGGCGATCAGGCCCACGGCCATGCCGTTGCTGCGGGCCGCTTCGTG                                                                           <  2:648291/84‑1                                                                                                                                                        TGGCTGCCGGCACCATCGGCGCCCACCGCCAGGTCGGCGATCAGGCCCACGGCCATGCCGTTGCTGCGGGCCGCTTCGTGGGCA                                                                       <  1:859546/84‑1                                                                                                                                                        TGGCTGCCGGCACCATCGGCGCCCACCGCCAGGTCGGCGATCAGGCCCACGGCCATGCCGTTGCTGCGGGCCGCTTCGTGGGCA                                                                       >  2:859546/1‑84                                                                                                                                                           CTGCCGGCACCATCGGCGCCCACCGCCAGGTCGGCGATCAGGCCCACGGCCATGCCGTTGCTGCGGGCCGCTTCGTGGGCACGTTGCAGGCCACGTTCAGTCAGCCACTGGCAGAAGGCGCGGAACTCGACCTTGGCCGGGTAGGCATTG  <  2:86688/150‑1                                                                                                                                                           CTGCCGGCACCATCGGCGCCCACCGCCAGGTCGGAGACGTTTCCCACGGCCATGCCGTTGCTGCGGGCCGCTTCGTGGGCACGTTGCAGGCCACGTTCAGTCAGCCACTGGCAGAAGGCGCGGAACTCGACCTTGGCCGGGTAGGCATTG  <  1:1330377/150‑1                                                                                                                                                                                                                                                                                                                  CCCTACCACCCGGAAGTGGAGGCTTTAGCCAATGCCTACCCGGCCAAGGTCGAGTTCCGCGCCTTCTGCCAGTGGCTGACTGAACGTGGCCTGCAACGTGCCCACGAAGCGGCCCGCAGCAACGGCATGGCCGTGGGCCTGATCGCCGACCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4569102‑4569256 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggcTGCCGGCACCATCGGCGCCCACCGCCAGGTCGGCGATCAGGCCCACGGCCATGCCGTTGCTGCGGGCCGCTTCGTGGGCACGTTGCAGGCCACGTTCAGTCAGCCACTGGCAGAAGGCGCGGAACTCGACCTTGGCCGGGTAGGCATTG  <  NC_002947/4569279‑4569131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.