New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4572333 | 104 (1.170) | 7 (0.080) | 5/234 | NT | 6.1% | coding (2153/2775 nt) | treY | maltooligosyl trehalose synthase |
? | NC_002947 | = 4572365 | 116 (1.380) | coding (2185/2775 nt) | treY | maltooligosyl trehalose synthase |
CCTGCGTCAATACGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4572181‑4572333 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTGGTTCTCGCTGTCCAGCAGCAGGCCGTCGAGGTAATGAGCGCAGGCGCCTTCGTAGGCCTCGTTCGGCGCGCTCCAGCTACTGCGCAGCTTGGCCTCGCGCAGGGCCTTCTGC < NC_002947/4572365‑4572217 CCTGCGTCAATACGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCA > 1:141003/1‑150 CCTGCGTCAATACGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAAC < 2:1946742/148‑1 CCTGCGTCAATACGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAAC > 1:1946742/1‑148 CTGCGTCAATACGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGTACAGCGAGAACCAG > 2:2323650/1‑150 CTGCGTCAATACGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAG > 2:1816782/1‑150 GTCAATACGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAAC < 1:1058589/143‑1 GTCAATACGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAAC > 2:1058589/1‑143 AAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGGGTGCTGCTGGACAGCGAGAACCAGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTG < 2:1182776/150‑1 AAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTG < 1:1474931/150‑1 CCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCCGGGACTCCGCGTCGGCCAGCGACTTGCGCAGTTGCTGGagat > 1:1832977/1‑146 CCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAG > 1:2159877/1‑106 CCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAG < 2:2159877/106‑1 GCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCA < 2:1062121/100‑1 GCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCA > 1:1062121/1‑100 TACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTG > 1:1874611/1‑96 TACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTG < 2:1874611/96‑1 CTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCT < 1:2201447/71‑1 CTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCT > 2:2201447/1‑71 CAGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTGGTTCTCGCTGTCCAGCAGCAGGCCGTCGAGGT < 2:1000668/74‑1 CAGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTGGTTCTCGCTGTCCAGCAGCAGGCCGTCGAGGT > 1:1000668/1‑74 AGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTGGTTCTCGCTGTCCAGCAGCAGGCCGTCGAGGTAATGAGCGCAGGCGCCTTCGTAGGCCTCGTTCGGCGCACTCCAGCTACTGCGCAGCTTGGCCTCGCGCAG < 1:2044353/143‑1 AGCAGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTGGTTCTCGCTGTCCAGCAGCAGGCCGTCGAGGTAATGAGCGCAGGCGCCTTCGTAGGCCTCGTTCGGCGCACTCCAGCTACTGCGCAGCTTGGCCTCGCGCAG > 2:2044353/1‑143 AGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTGGTTCTCGCTGTCCAGCAGCAGGCCGTCGAGGTAATGAGCGCAGGCGCCTTCGTAGGCCTCGTTCGGCGCGCTCCAGCTACTGCGCAGCTTGGCCTCGCGCAGGGCCTTCTGC < 1:875003/150‑1 CCTGCGTCAATACGCCGAGCGTGTTCGCCAGTGGCAGCAGAAGGCCCTGCGCGAGGCCAAGCTGCGCAGTAGCTGGAGCGCGCCGAACGAGGCCTACGAAGGCGCCTGCGCTCATTACCTCGACGGCCTGCTGCTGGACAGCGAGAACCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4572181‑4572333 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaGCTGCGCCGCGTCGGCCAGCGACTTGCGCAGTTGCTGGTTCTCGCTGTCCAGCAGCAGGCCGTCGAGGTAATGAGCGCAGGCGCCTTCGTAGGCCTCGTTCGGCGCGCTCCAGCTACTGCGCAGCTTGGCCTCGCGCAGGGCCTTCTGC < NC_002947/4572365‑4572217 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |