| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4642906 = | 110 (1.240) | 7 (0.080) | 7/230 | NT | 6.9% | coding (803/897 nt) | PP_4107 | LysR family transcriptional regulator |
| ? | NC_002947 | 4642946 = | 87 (1.050) | coding (843/897 nt) | PP_4107 | LysR family transcriptional regulator | |||||
GTTGGCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGC‑CGCATGCTCG‑GCATGCGCGATGAAGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4643062‑4642906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtgccCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATGGA > NC_002947/4642946‑4643094 GTTGGCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGC‑CGCATGCTCG‑GCATGCGCGATG > 1:161744/1‑150 TTGGCTGTGCCGGCCTCTTCGCCGGCAAGCCCGCTCCTGCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCCCTGCACGAAGGCCCCGATCTTGGGCACTTCGGC‑CGCATGCTCG‑GCATGCGCGATGA > 2:1189684/1‑150 TGGCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGC‑CGCATGCTCG‑GCATGCGCGATGAA < 1:2317995/150‑1 GGCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGC‑CGCATGCTCG‑GCATGCGCGATGAAG < 2:347681/150‑1 CTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTGCAAGAGGCCGGGGCGGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGC‑CGCATGCTCG‑GCATGCGCGATGAAGTG > 2:702221/1‑150 tgCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCATCGCGCATGC‑CGAGCATGCG‑GCCGAAGTGCCCAAGATCAGGG < 2:170288/148‑1 GGGCACTTCGGC‑CGCATGCTCG‑GCATGCGCGATGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCA > 1:651030/1‑150 CACTTCGGC‑CGCATGCTCG‑GCATGCGCGATGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAG > 1:1235772/1‑150 TTCGGC‑CGCATGCTCG‑GCATGCGCGATGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGC < 1:1790616/148‑1 TTCGGC‑CGCATGCTCG‑GCATGCGCGATGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGC > 2:1790616/1‑148 TCG‑GCATGCGCGATGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGG > 1:326218/1‑63 TCG‑GCATGCGCGATGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGG < 2:326218/63‑1 GTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCA < 1:890848/150‑1 TGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCAT < 1:1294673/150‑1 TGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCAT > 2:314845/1‑150 GCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATG > 2:473256/1‑150 CCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATGG > 1:624436/1‑150 CCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATGG > 1:1520941/1‑150 CCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATGGA > 1:715997/1‑150 CCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAG < 1:57166/81‑1 CCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAG < 1:57082/81‑1 CCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAG > 2:57082/1‑81 CCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAG > 2:57166/1‑81 GTTGGCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGC‑CGCATGCTCG‑GCATGCGCGATGAAGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4643062‑4642906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtgccCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTGGCAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGCCAACCCAAAAAACCGGCTAGATCACGAATCCATGGA > NC_002947/4642946‑4643094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |