| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4727770 = | 118 (1.330) | 7 (0.080) | 7/234 | NT | 6.2% | intergenic (‑343/+61) | brnQ/sucD | branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha |
| ? | NC_002947 | 4727819 = | 99 (1.180) | intergenic (‑392/+12) | brnQ/sucD | branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha | |||||
GCCCTGCAGGACGCGGGTGTGAAAACCGTGCGTTCCCTGGCTGACATCGGCAAGGCCCTGGCCGAGCTGACTGGCTGGGAAGCCAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4727923‑4727770‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggggGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGCCGGAGATG > NC_002947/4727819‑4727963 GCCCTGCAGGACGCGGGTGTGAAAACCGTGCGTTCCCTGGCTGACATCGGCAAGGCCCTGGCCGAGCTGACTGGCTGGGAAGCCAAGAAGTAATACTCCTAAACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGg > 2:108594/1‑149 CCCTGCAGGACGCGGGTGTGAAAACCGTGCGTTCCCTGGCTGACATCGGCAAGGCCCTGGCCGAGCTGACTGGCTGGGAAGCCAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTG < 2:380456/150‑1 CCTGCAGGACGCGGGTGTGAAAACCGTGCGTTCCCTGGCTGACATCGGCAAGGCCCTGGCCGAGCTGACTGGCTGGGAAGCCAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGG < 1:596638/150‑1 TGCAGGACGCGGGTGTGAAAACCGTGCGTTCCCTGGCTGACATCGGCAAGGCCCTGGCCGAGCTGACTGGCTGGGAAGCCAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGG < 2:221593/150‑1 ACGCGGGTGTGAAAACCGTGCGTTCCCTGGCTGACATCGGCAAGGCCCTGGCCGAGCTGACTGGCTGGGAAGCCAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGG > 1:217386/1‑142 ACGCGGGTGTGAAAACCGTGCGTTCCCTGGCTGACATCGGCAAGGCCCTGGCCGAGCTGACTGGCTGGGAAGCCAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGG < 2:217386/142‑1 AAGGCCCTGGCCGAGCTGACTGGCTGGGAAGCCAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTtg < 1:1355694/101‑3 AAGGCCCTGGCCGAGCTGACTGGCTGGGAAGCCAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTtg > 2:1355694/1‑99 ACTGGCTGGGAAGCCAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTG < 1:1715645/82‑1 ACTGGCTGGGAAGCCAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTG > 2:1715645/1‑82 GAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGG < 1:811220/117‑1 GAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGG > 2:811220/1‑117 CTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGA < 2:26241/128‑1 CTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGA > 1:26241/1‑128 ACCACCCAAGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCT > 2:349320/1‑150 ACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGC > 2:343696/1‑150 CCTTTGTCGTATGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTT < 1:349320/150‑1 TGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGCCGGAGATG > 2:2173706/1‑150 GGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGC > 1:744222/1‑141 GGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGC < 2:744222/141‑1 GCCCTGCAGGACGCGGGTGTGAAAACCGTGCGTTCCCTGGCTGACATCGGCAAGGCCCTGGCCGAGCTGACTGGCTGGGAAGCCAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4727923‑4727770‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggggGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGCCGGAGATG > NC_002947/4727819‑4727963 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |