| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4727783 | 110 (1.240) | 11 (0.130) | 11/240 | NT | 9.4% | intergenic (‑356/+48) | brnQ/sucD | branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha |
| ? | NC_002947 | = 4727805 | 105 (1.220) | intergenic (‑378/+26) | brnQ/sucD | branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha | |||||
GTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACG‑ACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4727660‑4727783‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGTTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAATAGAGATTCTTCGATAGGTTTGATAGGAATTTTCACGCAGACGAATGTTTCAATCCGAGGATAATACCT < NC_002947/4727805‑4727658 tTATTATCCTCAGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACG‑ACAGAGGCCACCTTCGGGTGGCCTTTGTC < 1:34721/149‑1 AAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACG‑ACAGAGGCCACCTTCGGGTGGCCTTTG > 1:2048297/1‑114 AAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACG‑ACAGAGGCCACCTTCGGGTGGCCTTTG < 2:2048297/114‑1 CCAGCACCGGCCTCTTCTCGGGTAAACCCGCTCCTACGAACCCCACATACG‑ACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTG > 1:671634/1‑87 CCAGCACCGGCCTCTTCTCGGGTAAACCCGCTCCTACGAACCCCACATACG‑ACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTG < 2:671634/87‑1 ACCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑ACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGTTCGTA < 1:240219/90‑1 ACCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑ACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGTTCGTA > 2:240219/1‑90 CCGCTCCTACGAACCCCACATACG‑ACAAAGGCCACCCGAAGGTGGCCTCTGTCGTATGTGGGGTTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAATAGAGATTCTTCGATAGGTTTGAT < 1:175579/130‑1 CCGCTCCTACGAACCCCACATACG‑ACAAAGGCCACCCGAAGGTGGCCTCTGTCGTATGTGGGGTTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAATAGAGATTCTTCGATAGGTTTGAT > 2:175579/1‑130 ACCCCACATACG‑ACAAAGGCCACCCGAAGGTGGCCTCTGTCGTATGTGGGGTTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAATAGAGATTCTTCGAT < 1:1912173/109‑1 ACCCCACATACG‑ACAAAGGCCACCCGAAGGTGGCCTCTGTCGTATGTGGGGTTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAATAGAGATTCTTCGAT > 2:1912173/1‑109 ACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGTTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAATAGAGATTCTTCGATAGGTTTGATAGGAATTTTCACGCAGACGAATGTTTCAATCCGAGGATAATACC > 2:2376465/1‑150 ACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGTTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAATAGAGATTCTTCGATAGGTTTGATAGGAATTTTCACGCAGACGAATGTTTCAATCCGAGGATAATACC > 2:328590/1‑150 CAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGTTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAATAGAGATTCTTCGATAGGTTTGATAGGAATTTTCACGCAGACGAATGTTTCAATCCGAGGATAATACCT < 1:114359/150‑1 AGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGTTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAATAGAGATTCTTCGATAGGTTT < 1:2099795/101‑1 AGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGTTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAATAGAGATTCTTCGATAGGTTT > 2:2099795/1‑101 GTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACG‑ACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4727660‑4727783‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGTTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAATAGAGATTCTTCGATAGGTTTGATAGGAATTTTCACGCAGACGAATGTTTCAATCCGAGGATAATACCT < NC_002947/4727805‑4727658 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |