| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4861163 | 110 (1.240) | 15 (0.180) | 12/238 | NT | 16.2% | intergenic (‑69/+168) | ligA/PP_4275 | DNA ligase/cell division protein ZipA |
| ? | NC_002947 | = 4861272 | 49 (0.570) | intergenic (‑178/+59) | ligA/PP_4275 | DNA ligase/cell division protein ZipA | |||||
GCTGGGCTCGTCGAGCACGTAGTAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4861011‑4861163‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGA < NC_002947/4861272‑4861176 GCTGGGCTCGTCGAGCACGTAGTAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTG > 1:305474/1‑150 TGGGCTCGTCGAGCACGTAGTAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGGGTGGGGTTCCAGGTGTCTGTT > 1:698268/1‑150 TGGGCTCGTCGAGCACGTAGTAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTT < 2:2405065/150‑1 GTAGTAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCGGCCTCT < 2:1881083/150‑1 GTAGTAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTT < 1:1671820/134‑1 GTAGTAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTT > 2:1671820/1‑134 TTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCGGCCTCTTCGCGGGTAAACC < 1:809173/150‑1 agCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTG > 2:1609158/3‑111 ATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTG < 1:1609158/111‑1 CACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCA > 1:2104163/1‑150 GGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGG < 1:1254033/150‑1 GGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGG > 2:1254033/1‑150 GATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGG < 2:2104163/150‑1 ATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAACCCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGT < 1:2103247/150‑1 GTCTTCTCTTGCGAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTAC < 2:630203/150‑1 GTCTTCTCTTGCGAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTAC > 1:630203/1‑150 TCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTG < 2:427360/58‑1 TCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTG > 1:427360/1‑58 TCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCCGTTGCCTGTGCCGGCCTCTTCGCTGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGC > 2:148106/1‑150 TGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCCGTTGCCTGTGCCGGCCTCTTCGCTGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGA < 1:148106/150‑1 GCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGG > 1:576424/1‑135 GCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGG < 2:576424/135‑1 AAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGT > 2:2284916/1‑42 AAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGT < 1:2284916/42‑1 GTGCGTGGGGTTCCAGGTGTCTGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGA < 1:692924/104‑1 GTGCGTGGGGTTCCAGGTGTCTGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGA > 2:692924/1‑104 GTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGT > 2:2061866/1‑88 GTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGT < 1:2061866/88‑1 GCTGGGCTCGTCGAGCACGTAGTAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4861011‑4861163‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGA < NC_002947/4861272‑4861176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |