| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4878547 = | 110 (1.240) | 7 (0.080) | 7/236 | NT | 6.7% | coding (225/516 nt) | pucL | 2‑oxo‑4‑hydroxy‑4‑carboxy‑5‑ureidoimidazoline decarboxylase |
| ? | NC_002947 | 4878573 = | 89 (1.050) | coding (251/516 nt) | pucL | 2‑oxo‑4‑hydroxy‑4‑carboxy‑5‑ureidoimidazoline decarboxylase | |||||
GATGAACGGGAACTGAAACTTGGCTTTATAGGCATCGTTCAGCTCGGTGAAACGGGCGAACTCCTCGGCGGTGCACTGGTGAATGCCGGCGCCGGCCTGTTCGTTGGTGCTCGATTCGGTCAGCTCGCCCTGGATGGCTGCCTTGCCGGCCA‑‑‑‑‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4878700‑4878547‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cca‑‑‑‑‑ggGCGAGCTGACCGAATCGAGCACCAACGAACAGGCCGGCGCCGGCATTCACCAGTGCACCGCCGAGGAGTTCGCCCGTTTCACCGAGCTGAACGATGCCTATAAAGCCAAGTTTCAGTTCCCGTTCATCATGGCGGTGAAGGGCAGCA > NC_002947/4878573‑4878719 GATGAACGGGAACTGAAACTTGGCTTTATAGGCATCGTTCAGCTCGGTGAAACGGGCGAACTCCTCGGCGGTGCACTGGTGAATGCCGGCGCCGGCCTGTTCGTTGGTGCTCGATTCGGTCAGCTCGCCCTGGATGGCTGCCTTGCCGGC > 2:183116/1‑150 GAACGGGAACTGAAACTTGGCTTTATAGGCATCGTTCAGCTCGGTGAAACGGGCGAACTCCTCGGCGGTGCACTGGTGAATGCCGGCGCCGGCCTGTTCGTTGGTGCTCGATTCGGTCAGCTCGCCCTGGATGGCTGCCTTGCCGGCCA‑‑‑‑‑G > 1:304854/1‑150 TTTATAGGCATCGTTCAGCTCGGTGAAACGGGCGAACTCCTCGGCGGTGCACTGGTGAATGCCGGCGCCGGCCTGTTCGTTGGTGCTCGATTCGGTCAGCTCGCCCTGGATGGCTGCCTTGCCGGCCA‑‑‑‑‑G < 1:1795541/129‑1 TTTATAGGCATCGTTCAGCTCGGTGAAACGGGCGAACTCCTCGGCGGTGCACTGGTGAATGCCGGCGCCGGCCTGTTCGTTGGTGCTCGATTCGGTCAGCTCGCCCTGGATGGCTGCCTTGCCGGCCA‑‑‑‑‑G > 2:1795541/1‑129 GTCAGCTCGCCCTGGATGGCTGCCTTGCCGGCCAGGTCCGGGTGAGCTGACCGAATCGAGCACCAACGAACAGGCCGGCGCCGGCATTCACCAGTGCACCGCCGAGGAGTTCGCCCGTTTCACCGAGCTGAACGATGCCTATAAAGCCAA > 2:1915236/1‑150 CTCGCCCTGGATGGCTGCCTTGCCGGCCA‑‑‑‑‑GGGCGAGCTGACCGAATCGAGCACCAACGAACAGGCCGGCGCCGGCATTCACCAGTGCACCGCCGAGGAGTTCGCCCGTTTCACCGAGCTG < 1:1250138/120‑1 CTCGCCCTGGATGGCTGCCTTGCCGGCCA‑‑‑‑‑GGGCGAGCTGACCGAATCGAGCACCAACGAACAGGCCGGCGCCGGCATTCACCAGTGCACCGCCGAGGAGTTCGCCCGTTTCACCGAGCTG > 2:1250138/1‑120 GCCCTGGATGGCTGCCTTGCCGGCCA‑‑‑‑‑GGGCGAGCTGACCGAATCGAGCACCAACGAACAGGCCGGCGCCGGCATTCACCAGTGCACCGCCGAGGAGTTCGCCCGTTTCACCGAGCTGAACGATGCCTATAAAGCCAAGTTTCAGTTCCCG > 1:38466/1‑150 CCTGGATGGCTGCCTTGCCGGCCA‑‑‑‑‑GGGCGAGCTGACCGAATCGAGCACCAACGAACAGGCCGGCGCCGGCATTCACCAGTGCACCGCCGAGGAGTTCGCCCGTTTCACCGAGCTGAACGATGCCTATAAAGCCAAGTTTCAGTTCCCGTT > 2:3402/1‑150 CTGGATGGCTGCCTTGCCGGCCA‑‑‑‑‑GGGCGAGCTGACCGAATCGAGCACCAACGAACAGGCCGGCGCCGGCATTCACCAGTGCACCGCCGAG < 1:116702/90‑1 CTGGATGGCTGCCTTGCCGGCCA‑‑‑‑‑GGGCGAGCTGACCGAATCGAGCACCAACGAACAGGCCGGCGCCGGCATTCACCAGTGCACCGCCGAG > 2:116702/1‑90 CCA‑‑‑‑‑GGGCGAGCTGACCGAATCGAGCATCAACGAACAGGCCGGCGCCGGCATTCACCAGTGCACCGCCGAGGAGTTCGCCCGTTTCACCGAGCTGAACGATGCCTATAAAGCCAAGTTTCAGTTCCCGTTCATCATGGCGGTGAAGGGCAG > 1:2132467/1‑150 A‑‑‑‑‑GGGCGAGCTGACCGAATCGAGCACCAACGAACAGGCCGGCGCCGGCATTCACCAGTGCACCGCCGAGGAGTTCGCCCGTTTCACCGAGCTGAACGATGCCTATAAAGCCAAGTTTCAGTTCCCGTTCATCATGGCGGTGAAGGGCAGCA > 1:1264184/1‑150 GATGAACGGGAACTGAAACTTGGCTTTATAGGCATCGTTCAGCTCGGTGAAACGGGCGAACTCCTCGGCGGTGCACTGGTGAATGCCGGCGCCGGCCTGTTCGTTGGTGCTCGATTCGGTCAGCTCGCCCTGGATGGCTGCCTTGCCGGCCA‑‑‑‑‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4878700‑4878547‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cca‑‑‑‑‑ggGCGAGCTGACCGAATCGAGCACCAACGAACAGGCCGGCGCCGGCATTCACCAGTGCACCGCCGAGGAGTTCGCCCGTTTCACCGAGCTGAACGATGCCTATAAAGCCAAGTTTCAGTTCCCGTTCATCATGGCGGTGAAGGGCAGCA > NC_002947/4878573‑4878719 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |