| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4889614 = | 41 (0.460) | 10 (0.150) | 7/192 | NT | 20.4% | intergenic (+15/‑138) | hyi/glxR | hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase |
| ? | NC_002947 | 4889705 = | 46 (0.670) | intergenic (+106/‑47) | hyi/glxR | hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase | |||||
CCCATGATGCCGGTGCCGATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4889789‑4889614‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGAC > NC_002947/4889705‑4889853 CCCATGATGCCGGTGCCGATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGT > 1:1631194/1‑150 GATGCCGGTGCCGATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCG < 2:983925/150‑1 ATGCCGGTGCCGATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGG < 1:1653898/150‑1 ATGCCGGTGCCGATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGG < 2:658322/150‑1 ATGCCGGTGCCGATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGG < 1:1786459/150‑1 CGGTGCCGATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACACCTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGc > 2:2366655/1‑149 GATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCT > 2:2139788/1‑150 GATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCG < 1:1541456/138‑1 GATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCG > 2:1541456/1‑138 GATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTAGGAGCGGGCTCGCCCGAGAAGCAGACAACGCGGTGAAGTTCACCACCATTGCTGGCGTTCGCGGGCGAGacaaca > 2:2201731/1‑144 ACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACA > 1:766268/1‑150 ACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACA > 1:766133/1‑150 CCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAG > 1:1216129/1‑150 CCGATTTTAGCCATGAGAAATTACCTCTTAGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAG > 1:442631/1‑150 GCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGTGGGC > 1:1052188/1‑76 GCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGTGGGC < 2:1052188/76‑1 CCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGCGAGCACGCTCCCACAGGGGGCCAAAGCTTGCTTGGGATAACACAATTACAAAGAGGTAATTTCTCATGGCTAAAAT > 2:299252/1‑150 CCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATC > 2:1928521/1‑150 TGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGT < 1:1928521/150‑1 TGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGG > 1:284648/1‑66 TGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGG < 2:284648/66‑1 CCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATC < 1:2147751/140‑1 CCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATC > 2:2147751/1‑140 CCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCAT > 2:667164/1‑150 CCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCAT > 2:896008/1‑150 CCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCAT > 2:970876/1‑150 CCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCAT > 1:1906449/1‑150 CCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGGG < 1:2210408/73‑1 CCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGGG > 2:2210408/1‑73 AAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGG < 1:667164/150‑1 TTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACA < 2:1626165/150‑1 TTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCA < 1:2300140/99‑1 TTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCA > 2:2300140/1‑99 TTCGCGGGAGAGCCCGCTCCCACAGGGGGCAAAAGATTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAAACGGTTTCATCGGCACCGACATCATCGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACA > 2:500543/1‑150 TCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAG < 1:2053355/150‑1 GCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCC > 1:1733401/1‑150 CGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTC < 2:2089536/150‑1 GCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATT < 1:970876/150‑1 CCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTT > 2:786347/1‑150 CCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTT < 1:706126/150‑1 CCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCACTT < 1:2407056/150‑1 CCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACA < 2:2251589/138‑1 CCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACA > 1:2251589/1‑138 ACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGG > 2:2401917/1‑90 ACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCACGG < 1:2401917/90‑1 GGGCAAACGCTTGCCTGAGATATCACGATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGAC < 2:1945518/150‑1 CCCATGATGCCGGTGCCGATGAAACCGATTTTAGCCATGAGAAATTACCTCTTTGTAATTGTGATATCTCAAGCAAGCTTTGGCCCCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4889789‑4889614‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGAC > NC_002947/4889705‑4889853 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |