New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4929832 = | 114 (1.290) | 6 (0.070) | 6/224 | NT | 6.1% | coding (385/2244 nt) | cheA | chemotaxis histidine kinase CheA |
? | NC_002947 | 4929912 = | 82 (1.020) | coding (305/2244 nt) | cheA | chemotaxis histidine kinase CheA |
GTCCTGCGCAAAGGTGAGCGCCGGGTCGATGCGGAACTGATGGATGTGGTGCTCGAGGCACTGGATACGGTCAACAGCATGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4929991‑4929832 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggccgaacATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTGAAGGAAGCCGGCGCCCCC > NC_002947/4929912‑4930060 GTCCTGCGCAAAGGTGAGCGCCGGGTCGATGCGGAACTGATGGATGTGGTGCTCGAGGCACTGGATACGGTCAACAGCATGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGC > 2:1690226/1‑150 TGCGCAAAGGTGAGCGCCGGGTCGATGCGGAACTGATGGATGTGGTGCTCGAGGCACTGGATACGGTCAACAGCATGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGG > 1:237899/1‑150 GCGCAAAGGTGAGCGCCGGGTCGATGCGGAACTGATGGATGTGGTGCTCGAGGCACTGGATACGGTCAACAGCATGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGC < 1:227190/150‑1 AAAGGTGAGCGCCGGGTCGATGCGGAACTGATGGATGTGGTGCTCGAGGCACTGGATACGGTCAACAGCATGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAA > 1:1440240/1‑150 GCACTGGATACGGTCAACAGCATGTTCGGCCAGGTGCGCAAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTG > 1:1437390/1‑96 GCACTGGATACGGTCAACAGCATGTTCGGCCAGGTGCGCAAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTG < 2:1437390/96‑1 GATACGGTCAACAGCATGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTG < 1:1352784/90‑1 GATACGGTCAACAGCATGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTG > 2:1352784/1‑90 TCAACAGCATGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGG > 2:2114435/1‑150 GCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGC > 1:1747261/1‑150 GTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTT < 1:162021/141‑1 GTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTT > 2:162021/1‑141 GCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGT < 1:2114435/150‑1 GAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAA < 2:1747261/150‑1 GCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTGAAGGAAGCCGGC < 1:603502/150‑1 GCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCAT < 1:428507/48‑1 GCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCAT > 2:428507/1‑48 CGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTGAAGGAAGCCGGCGC > 2:595738/1‑150 GAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTGAAGGAAGCCGGCGCC > 2:1491662/1‑150 CATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTGAAGGAAGCCGGCGCCCCC > 1:1575503/1‑150 GTCCTGCGCAAAGGTGAGCGCCGGGTCGATGCGGAACTGATGGATGTGGTGCTCGAGGCACTGGATACGGTCAACAGCATGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4929991‑4929832 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggccgaacATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTGAAGGAAGCCGGCGCCCCC > NC_002947/4929912‑4930060 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |