| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4934874 = | 100 (1.130) | 10 (0.110) | 10/246 | NT | 9.2% | coding (1761/2130 nt) | flhA | flagellar export pore protein |
| ? | NC_002947 | 4934899 = | 97 (1.100) | coding (1736/2130 nt) | flhA | flagellar export pore protein | |||||
ATTTCCTTGTCGGGGCTGCTCAAGGTGCTGCAAGCCCTGTTGTCGGAACAGGTGCCAGTGCGCGATATTCGCAGTATTGCCGAGGCCATCGCGAACAACGCGGGCAAGAGTCAAGATACCGCCG‑CACTGGTGGCGGCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4935014‑4934874‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAGGAAATGACACCCGGCAC > NC_002947/4934899‑4935026 ATTTCCTTGTCGGGGCTGCTCAAGGTGCTGCAAGCCCTGTTGTCGGAACAGGTGCCAGTGCGCGATATTCGCAGTATTGCCGAGGCCATCGCGAACAACGCGGGCAAGAGTCAAGATACCGCCG‑CACTGGTGGCGGCGGTGTCTTGACTC < 1:1828212/150‑1 GGGGCTGCTCAAGGTGCTGCAAGCCCTGTTGTCGGAACAGGTGCCAGTGCGCGATATTCGCAGTATTGCCGAGGCCATCGCGAACAACGCGGGCAAGAGTCAAGACACCGCCGCCACCAGT‑GCGGCGGTATCTTGACTCTTGCCCGCGTT < 1:275269/150‑1 GCCCTGTTGTCGGAACAGGTGCCAGTGCGCGATATTCGCAGTATTGCCGAGGCCATCGCGAACAACGCGGGCAAGAGTCAAGACACCGCCGCCACCAGT‑GCGGCGGTATCTTGACTCTTGCCCGCGTTGTT > 1:2282261/1‑131 GCCCTGTTGTCGGAACAGGTGCCAGTGCGCGATATTCGCAGTATTGCCGAGGCCATCGCGAACAACGCGGGCAAGAGTCAAGACACCGCCGCCACCAGT‑GCGGCGGTATCTTGACTCTTGCCCGCGTTGTT < 2:2282261/131‑1 TTCGCAGTATTGCCGAGGCCATCGCGAACAACGCGGGCAAGAGTCAAGACACCGCCGCCACCAGT‑GCGGCGGTGTCTT > 1:1976286/1‑78 TTCGCAGTATTGCCGAGGCCATCGCGAACAACGCGGGCAAGAGTCAAGACACCGCCGCCACCAGT‑GCGGCGGTGTCTT < 2:1976286/78‑1 CAAGATACCGCCG‑CACTGGTGGCGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGAACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAGGAAATGACA > 2:1272679/1‑150 GATACCGCCG‑CACTGGTGGCGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACC > 1:32074/1‑120 GATACCGCCG‑CACTGGTGGCGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACC < 2:32074/120‑1 GATACCGCCG‑CACTGGTGGCGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTC > 1:180364/1‑98 GATACCGCCG‑CACTGGTGGCGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTC < 2:180364/98‑1 TACCGCCG‑CACTGGT‑‑‑GGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGGAGCACCTTGAGCAGCCCCGACAAGGAAATGACACCCGGCAC > 1:3361/1‑150 ATTTCCTTGTCGGGGCTGCTCAAGGTGCTGCAAGCCCTGTTGTCGGAACAGGTGCCAGTGCGCGATATTCGCAGTATTGCCGAGGCCATCGCGAACAACGCGGGCAAGAGTCAAGATACCGCCG‑CACTGGTGGCGGCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4935014‑4934874‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAGGAAATGACACCCGGCAC > NC_002947/4934899‑4935026 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |