New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5019224 =	110 (1.240)	7 (0.080)	6/230	NT	6.7%	coding (936/996 nt)	PP_4423	hypothetical protein
	?	NC_002947	5019250 =	93 (1.120)					coding (910/996 nt)	PP_4423	hypothetical protein

AAGCGAGCATGCCGGGCTCATTGAATACTGCTTCAATCTGGGCGATCAGGTCTCCAAAGGCGATGTGATTGCTCGAGTGTACGACGTCACAAGAACAGGTGTGGCACCTACCGAATACAAGGCCCAACGTGACGGCCTTCTTGCCTGCCGTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5019377‑5019224 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtcacGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTATTCAATGAGCCCGGCATGCTCGCTTGCAATGAAGCAATTGTCGTC  >  NC_002947/5019250‑5019397                                                                                                                                                                                                                                                                                                                  AAGCGAGCATGCCGGGCTCATTGAATACTGCTTCAATCTGGGCGATCAGGTCTCCAAAGGCGATGTGATTGCTCGAGTGTACGACGTCACAAGAACAGGTGTGGCACCTACCGAATACAAGGCCCAACGTGACGGCCTTCTTGCCTGCCG                                                                                                                                                            >  1:1657840/1‑150                                                                                                                  AATACAAGGCCCAACGTGACGGCCTTCTTGCCTGCCGTCACTTCCCGGGGCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTATTCA                                           >  2:1748155/1‑150                                                                                                                       AAGGCCCAACGTGACGGCCTTCTTGCCTGCCGTCACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTA                                               <  1:168606/139‑1                                                                                                                       AAGGCCCAACGTGACGGCCTTCTTGCCTGCCGTCACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTA                                               >  2:168606/1‑139                                                                                                                                  TGACGGCCTTCTTGCCTGCCGTCACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTATTCAATGAGCCCGGCATGCTCG                         >  2:1240828/1‑150                                                                                                                                  TGACGGCCTTCTTGCCTGCCGTCACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTG                                                                                                             >  2:1897392/1‑66                                                                                                                                  TGACGGCCTTCTTGCCTGCCGTCACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTG                                                                                                             <  1:1897392/66‑1                                                                                                                                             TTGCCTGCCGTCACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTATTCAATGAGCCCGGCATGCTCGCTTGCAATGAA              <  1:1240828/150‑1                                                                                                                                                     CGTCACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTATTCAATGA                                       <  1:1124757/117‑1                                                                                                                                                     CGTCACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTATTCAATGA                                       >  2:1124757/1‑117                                                                                                                                                      GTCACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTATTCAATGAGCCCGGCATGCTCGCTTGCAATGAAGCAATTGTC     <  1:1136474/150‑1                                                                                                                                                       TCACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTATTCAATGAGCCCGGCATGCTCGCTTGCAATGAAGCAATTGTC     <  1:2180324/149‑1                                                                                                                                                       TCACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTATTCAATGAGCCCGGCATGCTCGCTTGCAATGAAGCAATTGTC     >  2:2180324/1‑149                                                                                                                                                       TCACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGAT                                                         >  2:1106619/1‑97                                                                                                                                                       TCACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGAT                                                         <  1:1106619/97‑1                                                                                                                                                         ACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTATTCAATGAGCCCGGCATGCTCGCTTGCAATGAAGCAATTGTCGTC  <  2:1497261/150‑1                                                                                                                                                         ACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTATTCAATGAGCCCGGCATGCTCGCTTGCAATGAA              <  2:1054053/138‑1                                                                                                                                                         ACGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTATTCAATGAGCCCGGCATGCTCGCTTGCAATGAA              >  1:1054053/1‑138                                                                                                                                                         ACGT‑‑TGGGCCTTGTATTCCGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTATTCAATGAGCCCGTCATGCTCGCTTGCAATGAAGCAATTGTCGTC  <  2:884658/150‑1                                                                                                                                                                                                                                                                                                                  AAGCGAGCATGCCGGGCTCATTGAATACTGCTTCAATCTGGGCGATCAGGTCTCCAAAGGCGATGTGATTGCTCGAGTGTACGACGTCACAAGAACAGGTGTGGCACCTACCGAATACAAGGCCCAACGTGACGGCCTTCTTGCCTGCCGTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5019377‑5019224 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtcacGT‑‑TGGGCCTTGTATTCGGTAGGTGCCACACCTGTTCTTGTGACGTCGTACACTCGAGCAATCACATCGCCTTTGGAGACCTGATCGCCCAGATTGAAGCAGTATTCAATGAGCCCGGCATGCTCGCTTGCAATGAAGCAATTGTCGTC  >  NC_002947/5019250‑5019397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.