New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5073061	91 (1.030)	6 (0.070)	5/228	NT	6.6%	intergenic (‑163/+219)	PP_5689/PP_5690	hypothetical protein/hypothetical protein
	?	NC_002947	= 5073067	86 (1.050)					intergenic (‑169/+213)	PP_5689/PP_5690	hypothetical protein/hypothetical protein

AAAATTTGCTCTTGCTGATAGAAACGGTTCGTTTCGGCAAACCTTGAGCGATTTTCTGAAATTTTTTTGACCAAGGGATTATACAAATGAGAGCAGAGGGGCAAGGGGCAAGAATCCTGGTCGCCGCAAAAAATTCAGACGTAAAAAAGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5072909‑5073061 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagccccTTAGCT‑‑GGGGCTTTTTTACGTCTGAATTTTTTGCGGCGACCAGGATTCTTGCCCCTTGCCCCTCTGCTCTCATTTGTATAATCCCTTGGTCAAAAAAATTTCAGAAAATCGCTCAAGGTTTGCCGAAACGAACCGTTTCTATC  <  NC_002947/5073067‑5072925                                                                                                                                                                                                                                                                                                            AAAATTTGCTCTTGCTGATAGAAAAGGATAGTTTCGGCAAACCTTGAGCGATTTTCTGAAATTTTTTTGACCAAGGGATTATACAAATGAGGGCAGAGGGGCAAGGGGCAAGAATCCTGGTCGCCGCAAAAAATTCAGACGTAAAAAAGC                                                                                                                                                      >  1:1631282/1‑150                   TAGAAACGGTTCGTTTCGGCAAACCTTGAGCGATTTTCTGAAATTTTTTTGACCAAGGGATTATACAAATGAGAGCAGAGGGGCAAGGGGCAAGAATCCTGGTCGCCGCAAAAAATTCAGACGTAAAAAAGCCCCTTAGCT‑‑GGGGCTTTT                                                                                                                                  <  1:2139466/150‑1                   TAGAAACGGTTCGTTTCGGCAAACCTTGAGCGATTTTCTGAAATTTTTTTGACCAAGGGATTATACAAATGAGAGCAGAGGGGCAAGGGGCAAGAATCCTGGTCGCCGCAAAAAATTCAGACGTAAAAAAGCCCCTTAGCT‑‑GGGGCTTTT                                                                                                                                  <  2:345795/150‑1                                                                                                                              GCAAAAAATTCAGACGTAAAAAAGCCCC‑‑AGCTAAGGGGCTTTTTTACGTCTGAATTTTTTGCGGCGACCAGGATTCTTGCCCCTTGCCCCTCTGCTCTCATTTGTATAATCCCTTGG                                                        >  1:1421584/1‑117                                                                                                                              GCAAAAAATTCAGACGTAAAAAAGCCCC‑‑AGCTAAGGGGCTTTTTTACGTCTGAATTTTTTGCGGCGACCAGGATTCTTGCCCCTTGCCCCTCTGCTCTCATTTGTATAATCCCTTGG                                                        <  2:1421584/117‑1                                                                                                                                    AATTCAGACGTAAAAAAGCCCC‑‑AGCTAAGGGGCTTTTTTACGTCTGAATTTTTTGCGGCGACCAGGATTCTTGCCCCTTGCCCCTCTGCTCTCATTTGTATAATCCCTTG                                                         <  1:1007441/110‑1                                                                                                                                    AATTCAGACGTAAAAAAGCCCC‑‑AGCTAAGGGGCTTTTTTACGTCTGAATTTTTTGCGGCGACCAGGATTCTTGCCCCTTGCCCCTCTGCTCTCATTTGTATAATCCCTTG                                                         >  2:1007441/1‑110                                                                                                                                                 caacGCCTCTTCGCT‑‑GGGGCTTTTGTCCGTCTGAATTTTTTGCGGCGCCCAGGATTCTTGCCCCTTGCCCCTCTGCTCTCATTTGTATAATCCCTTGGTCAAAAAAATTTCAGAAAATCGCTCAAGGTTTGCCGAAACGAACCGTTTCTA    <  1:947333/146‑1                                                                                                                                                   AAGCCCCTTAGCT‑‑GGGGCTTTTTTACGTCTGAATTTTTTGCGGCGACCAGGATTCTTGCCCCTTGCCCCTCTGCTCTCATTTGTATAATCCCTTGGTCAAAAAAATTTCAGAAAATCGCTCAAGGTTTGCCGAAACGAACCGTTTCTATC  >  2:1339594/1‑150                                                                                                                                                                                                                                                                                                            AAAATTTGCTCTTGCTGATAGAAACGGTTCGTTTCGGCAAACCTTGAGCGATTTTCTGAAATTTTTTTGACCAAGGGATTATACAAATGAGAGCAGAGGGGCAAGGGGCAAGAATCCTGGTCGCCGCAAAAAATTCAGACGTAAAAAAGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5072909‑5073061 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagccccTTAGCT‑‑GGGGCTTTTTTACGTCTGAATTTTTTGCGGCGACCAGGATTCTTGCCCCTTGCCCCTCTGCTCTCATTTGTATAATCCCTTGGTCAAAAAAATTTCAGAAAATCGCTCAAGGTTTGCCGAAACGAACCGTTTCTATC  <  NC_002947/5073067‑5072925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.