| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5119634 = | 120 (1.360) | 8 (0.100) | 8/216 | NT | 7.4% | intergenic (+19/+112) | PP_4505/PP_4506 | sensor histidine kinase/nitroreductase family protein |
| ? | NC_002947 | 5119711 = | 94 (1.210) | intergenic (+96/+35) | PP_4505/PP_4506 | sensor histidine kinase/nitroreductase family protein | |||||
ACGGCGCCGGTGCTGGAAACGGCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5119796‑5119634‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagaggccGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCAGCTCCTCGTTCTCGGCCAA > NC_002947/5119711‑5119859 ACGGCGCCGGTGCTGGAAACGGCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTAC < 1:355112/150‑1 GGCGCCGGTGCTGGAAACGGCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCC > 1:18035/1‑150 GGCGCCGGTGCTGGAAACGGCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCC > 1:2391549/1‑150 CGCCGGTGCTGGAAACGGCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGC < 2:729736/150‑1 CGGTGCTGGAAACGGCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAA < 2:939000/150‑1 GTGCTGGAAACGGCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGA < 2:2144773/150‑1 TGCTGGAAACGGCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTCACCCGCGAAGAG < 2:1854645/150‑1 CTGGAAACGGCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGC < 2:2276442/150‑1 GCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGG > 2:112120/1‑140 GCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGG < 1:112120/140‑1 ACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAA < 2:1454928/107‑1 ACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAA > 1:1454928/1‑107 CCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAG < 2:1945752/88‑1 CCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAG > 1:1945752/1‑88 CCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTC < 2:923141/145‑1 CCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTC > 1:923141/1‑145 GCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAA < 2:307998/111‑1 GCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAA > 1:307998/1‑111 TCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCG > 2:1605366/1‑150 CCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACA > 1:469996/1‑150 ACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCAGCTCC < 2:652055/150‑1 ACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAG < 1:1785505/134‑1 ACCCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAG > 2:1785505/1‑134 CCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCAGCTCCTC > 2:617366/1‑150 CCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCAGCTCCTC > 1:120476/1‑150 CCGCGAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCAGCTCCTC < 1:1126565/150‑1 GAAGAGGCCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCAGCTCCTCGTTC < 1:371775/150‑1 CCGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCGGCTCCTCGTTCTCGGCCA > 2:1823576/1‑150 CGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCAGCTCCTCGTTCTCGGCCAA < 1:617366/150‑1 ACGGCGCCGGTGCTGGAAACGGCTGATTTCGTTAGTAGCTGGGGTGAGTAACCTGGCCTTGGGCTGATTCATGCATCAAGGCATCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5119796‑5119634‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagaggccGGATGCCTTGATGCATGAATCAGCCCAAGGCCAGGTTACTCACCCCAGCTACTAACGAAATCAGCCGTTTCCAGCACCGGCGCCGTCCGCGGTTCGGTCAGCGGCGTACCGACATACAGGTAGCCGATCAGCTCCTCGTTCTCGGCCAA > NC_002947/5119711‑5119859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |