| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5196072 = | 120 (1.360) | 9 (0.110) | 7/232 | NT | 7.9% | coding (491/690 nt) | ybgJ | allophanate hydrolase subunit 1 |
| ? | NC_002947 | 5196105 = | 98 (1.170) | coding (458/690 nt) | ybgJ | allophanate hydrolase subunit 1 | |||||
AAGCGGAGATTGTTCGCTTGCACGGTGAACGCGATTACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5196225‑5196072‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtgggGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCA > NC_002947/5196105‑5196252 AAGCGGAGATTGTTCGCTTGCACGGTGAACGCGATTACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGGGTACCCCACGCAAGCGCGTGGCGGCGGGCA‑GCG < 2:381773/150‑1 AGCGGAGATTGTTCGCTTGCACGGTGAACGCGATTACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCA‑GCGT < 2:1875853/150‑1 GCGGAGATTGTTCGCTTGCACGGTGAACGCGATTACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCGTGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTG > 1:2092624/1‑150 GCGGAGATTGTTCGCTTGCACGGTGAACGCGATTACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTG < 1:412361/150‑1 GCGGAGATTGTTCGCTTGCACGGTGAACGCGATTACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTG > 1:917977/1‑150 CGGAGATTGTTCGCTTGCACGGTGAACGCGATTACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCCTGATCGGGTTCTACAAGCGCCTGGCCAGCCCTCGTCTGAGCACGCCACTCAAGCGCGTGGCGGCGGGCA‑GCGTGG > 1:420232/1‑150 CGGAGATTGTTCGCTTGCACGGTGAACGCGATTACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGG < 2:1838041/150‑1 CGGAGATTGTTCGCTTGCACGGTGAACGCGATTACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGG < 1:983879/150‑1 GCTTGCACGGTGAACGCGATTACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGG < 1:368831/138‑1 GCTTGCACGGTGAACGCGATTACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGG > 2:368831/1‑138 TTACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGC‑TGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGC < 2:2127065/140‑1 CGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGG > 1:1756733/1‑95 CGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGG < 2:1756733/95‑1 GCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAA < 1:2127065/140‑1 tggCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTC > 1:1667594/4‑150 CCCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAG > 1:305943/1‑105 CCCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAG < 2:305943/105‑1 CCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCC > 1:609912/1‑150 CCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCC < 2:609912/150‑1 CCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACC > 2:874193/1‑69 CCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACC < 1:874193/69‑1 GCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGC > 1:1898136/1‑150 CGTGGGGTACTCAGACGAGGGCTGGCCACGCCCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCC < 1:1211858/150‑1 TGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAG < 2:2224844/150‑1 GGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGCCCTCGGTCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCA < 1:1834382/150‑1 AAGCGGAGATTGTTCGCTTGCACGGTGAACGCGATTACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCA‑GCGTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5196225‑5196072‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtgggGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGCGAAGCCCAGGGCAAACACCGGGTAATCGCGTTCACCGTGCAAGCGAACAATCTCCGCTTCACTCAAGCCGCTGCGGGCTGCCAGCA > NC_002947/5196105‑5196252 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |