New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5282418 =	68 (0.770)	4 (0.050)	4/234	NT	6.2%	intergenic (‑30/‑104)	pcaH/ypfJ	protocatechuate 3,4‑dioxygenase subunit beta/zinc metalloprotease
	?	NC_002947	5282437 =	56 (0.670)					intergenic (‑49/‑85)	pcaH/ypfJ	protocatechuate 3,4‑dioxygenase subunit beta/zinc metalloprotease

GAAACAAGAAGACAAAGATTAGTTCAGGAAAGCGGCTGGTGTCAGGCAAAGGTGTTAAGACATCACCATTTGGTTATGTATGAGTTGGTCGATTTCAATATTCATCACGCGCGACCTGCCGGAAACTGCAAGTCCGCCTGCCACGCCCAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5282570‑5282418 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGT  >  NC_002947/5282437‑5282506                                                                                                                                                                                                                                 GAAACAAGAAGACAAAGATTAGTTCAGGAAAGCGGCTGGTGTCAGGCAAAGGTGTTAAGACATCACCATTTGGTTATGTATGAGTTGGTCGATTTCAATATTCATCACGCGCGACCTGCCGGAAACTGCAAGTCCGCCTGCCACGCCCAG                                                                           <  2:1404758/150‑1   AACAAGAAGACAAAGATTAGTTCAGGAAAGCGGCTGGTGTCAGGCAAAGGTGTTAAGACATCACCATTTGGTTATGTATGAGTTGGTCGATTTCAATGTTACTCACGCGCGACCTGCCGGAAACTGCAAGTCCGCCTGCCACGCCCAGGC                                                                         <  2:467530/150‑1   AACAAGAAGACAAAGATTAGTTCAGGAAAGCGGCTGGTGTCAGGCAAAGGTGTTAAGACATCACCATTTGGTTATGTATGAGTTGGTCGATTTCAATATTCATCACGCGCGACCTGCCGGAAACTGCAAGTCCGCCTGCCACGCCCAGGC                                                                         >  1:601421/1‑150   AACAAGAAGACAAAGATTAGTTCAGGAAAGCGGCTGGTGTCAGGCAAAGGTGTTAAGACATCACCATTTGGTTATGTATGAGTTGGTCGATTTCAATATTCATCACGCGCGACCTGCCGGAAACTGCAAGTCCGCCTGCCACGCCCAGGC                                                                         >  2:109289/1‑150              AAAGATTAGTTCAGGAAAGCGGCTGGTGTCAGGCAAAGGTGTTAAGACATCACCATTTGGTTATGTATGAGTTGGTCGATTTCAATATTCATCACGCGCGACCTGCCGGAAACTGCAAGTCCGCCTGCCACGCCCAGG                                                                          <  1:1136429/138‑1              AAAGATTAGTTCAGGAAAGCGGCTGGTGTCAGGCAAAGGTGTTAAGACATCACCATTTGGTTATGTATGAGTTGGTCGATTTCAATATTCATCACGCGCGACCTGCCGGAAACTGCAAGTCCGCCTGCCACGCCCAGG                                                                          >  2:1136429/1‑138                                          TCAGGCAAAGGTGTTAAGACATCACCATTTGGTTATGTATGAGTTGGTCGATTTCAATATTCATCACGCGCGACCTGCCGGAAACTGCAAGTCCGCCTGCCACGCCCAG                                                                           >  1:2003839/1‑109                                          TCAGGCAAAGGTGTTAAGACATCACCATTTGGTTATGTATGAGTTGGTCGATTTCAATATTCATCACGCGCGACCTGCCGGAAACTGCAAGTCCGCCTGCCACGCCCAG                                                                           <  2:2003839/109‑1                                                                                                                               TGCAAGTCCGCCTGCCACGCCCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGT  <  1:1826561/97‑1                                                                                                                               TGCAAGTCCGCCTGCCACGCCCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGT  >  2:1826561/1‑97                                                                                                                                      CCGCCTGCCACGCCCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATT                                  <  1:762296/58‑1                                                                                                                                      CCGCCTGCCACGCCCAGGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATT                                  >  2:762296/1‑58                                                                                                                                                      GGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCA                  >  1:129254/1‑58                                                                                                                                                      GGCGGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCA                  <  2:129254/58‑1                                                                                                                                                                                                                                 GAAACAAGAAGACAAAGATTAGTTCAGGAAAGCGGCTGGTGTCAGGCAAAGGTGTTAAGACATCACCATTTGGTTATGTATGAGTTGGTCGATTTCAATATTCATCACGCGCGACCTGCCGGAAACTGCAAGTCCGCCTGCCACGCCCAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5282570‑5282418 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgGACTTGCAGTTTCCGGCAGGTCGCGCGTGATGAATATTGAAATCGACCAACTCATACATAACCAAATGGT  >  NC_002947/5282437‑5282506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.