| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5404377 = | 94 (1.060) | 4 (0.050) | 4/214 | NT | 5.2% | intergenic (‑627/+90) | PP_4746/PP_4748 | transposase/amino acid ABC transporter substrate‑binding protein |
| ? | NC_002947 | 5404439 = | 65 (0.840) | intergenic (‑689/+28) | PP_4746/PP_4748 | transposase/amino acid ABC transporter substrate‑binding protein | |||||
ATCGCAGAAATCCTCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5404541‑5404377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcattcgcggctaAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTCTTGCCCAGTGC > NC_002947/5404439‑5404583 ATCGCAGAAATCCTCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATC < 1:914166/150‑1 GCAGAAATCCTCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCCAGCTTTCAGGAATGAGGCGTTATCGTT > 2:409191/1‑150 AGAAATCCTCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCA > 1:122672/1‑150 AGAAATCCTCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGCAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCA > 1:1095807/1‑150 ATCCTCGCCTCGTTTGGCCTGGACCGAGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTGATTCG > 1:67492/1‑150 CTCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGATCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGG < 2:1737357/150‑1 TCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGC < 2:1092262/150‑1 TCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGC > 1:1092262/1‑150 TCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGC > 2:1505775/1‑150 TCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGC > 1:1607694/1‑150 TCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGC > 2:355965/1‑150 GACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCG < 1:1804816/85‑1 GACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCG > 2:1804816/1‑85 CGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTC > 1:287563/1‑69 CGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTC < 2:287563/69‑1 GCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATC > 1:1547748/1‑56 GCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATC < 2:1547748/56‑1 GAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATT > 1:1305885/1‑150 AATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTAAAGCCGCGCCTACGGTATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTT > 1:780817/1‑150 GAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTG < 2:780817/150‑1 GCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGAT > 1:1148227/1‑150 GTTATCGTTCATTCGCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGA < 2:1305885/150‑1 TTCATTCGCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTCTT > 2:302804/1‑150 TCATTCGCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTCTTG < 1:1448700/150‑1 aggCGCGGCTTTAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATT < 1:1839045/141‑1 aggCGCGGCTTTAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATT > 2:1839045/4‑144 TCGCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTCTTGCCCA < 1:2317296/150‑1 GCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTC < 2:1447219/141‑1 GCGGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTC > 1:1447219/1‑141 GGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTCTTGCCCAGTGC > 2:1351273/1‑150 GGCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTCTTGCCCAGTGC < 1:113995/150‑1 GCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAG > 1:1810269/1‑90 GCTAAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAG < 2:1810269/90‑1 ATCGCAGAAATCCTCGCCTCGTTTGGCCTGGACCGCGAGGCTGCAAAAGTGGGGGAGCCGAGGATGATTCAGTAAAGACAATCAAATCCCGTAGGCGCGGCTTTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5404541‑5404377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcattcgcggctaAAGCCGCGCCTACGGGATTTGATTGTCTTTACTGAATCATCCTCGGCTCCCCCACTTTTGCAGCCTCGCGGTCCAGGCCAAACGAGGCGAGGATTTCTGCGATTTCGCCCGAGGCGTGCAAGGCCTGGATATTCTTGCCCAGTGC > NC_002947/5404439‑5404583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |