New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5513315	78 (0.880)	10 (0.140)	8/194	NT	13.5%	intergenic (+45/‑109)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	= 5513371	67 (0.960)					intergenic (+101/‑53)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein

ACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5513143‑5513315 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgccggcctcttcgcgggtaaACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCA  <  NC_002947/5513371‑5513227                                                                                                                                                                                                                                                                                                                                ACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCC                                                                                                                                                                          >  2:36828/1‑150 ACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCC                                                                                                                                                                          >  1:1703865/1‑150  CATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTTGATTTTTGGCGCCT                                                                                                                                                                         >  1:179848/1‑150    TGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGT                                                                                                                                                                       >  1:224885/1‑150       GCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCC                                                                                                                                                                    <  1:870971/150‑1               GGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT                                                                                                                                                            >  1:1303401/1‑150                  AGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGC                                                                                                                                                         <  1:827193/150‑1                      TTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGT                                                                                                                                                     >  1:1183347/1‑150                                                     GAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGC                                                                                                                                                         >  1:1032266/1‑115                                                     GAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGC                                                                                                                                                         <  2:1032266/115‑1                                                                  GAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCA                                                                                                         >  1:641418/1‑150                                                                  GAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCA                                                                                                         >  2:441122/1‑150                                                                    AGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCC                                                                                                                                                                    <  2:991863/89‑1                                                                    AGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCC                                                                                                                                                                    >  1:991863/1‑89                                                                      GCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGT                                                                                                     <  1:2165523/150‑1                                                                            TGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAAC                                                                                               <  1:836414/150‑1                                                                             GGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTC                                                                                                                                                           >  1:2163843/1‑89                                                                             GGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTC                                                                                                                                                           <  2:2163843/89‑1                                                                               gGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGG                                                                                            <  2:751936/149‑1                                                                                    GTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCT                                                                                                                                                               >  2:1663224/1‑78                                                                                    GTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCT                                                                                                                                                               <  1:1663224/78‑1                                                                                      GCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCC                                                                                     <  2:1183347/150‑1                                                                                        AGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGC                                                                                   <  1:441122/150‑1                                                                                                      GTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCG                                                                                                                                                          >  1:2365037/1‑65                                                                                                      GTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCG                                                                                                                                                          <  2:2365037/65‑1                                                                                                            GAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGC                                                               <  2:641418/150‑1                                                                                                                  TATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAAC                                                                                               <  2:2008838/112‑1                                                                                                                  TATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAAC                                                                                               >  1:2008838/1‑112                                                                                                                                                    GCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGG                                                                            <  1:1999443/97‑1                                                                                                                                                    GCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGG                                                                            >  2:1999443/1‑97                                                                                                                                                    GCCTGGGCCGGCCTCTTCGCGGGTAATCCCGGTCCTACGAATGGAACCGCCCAAGGGCATTACGCCCAGTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCATACATTCAAATCCGCTCAGCGGCCCAGATACACCTCGA                       <  2:995246/150‑1                                                                                                                                                     CCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGC                                                                           >  2:224418/1‑97                                                                                                                                                     CCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGC                                                                           <  1:224418/97‑1                                                                                                                                                       TGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCA                    >  2:1825277/1‑150                                                                                                                                                        GTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCAC                   <  1:2049045/150‑1                                                                                                                                                            CGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGC               >  2:698215/1‑150                                                                                                                                                            CGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGC               >  2:224885/1‑150                                                                                                                                                            CGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACCCCCACTGTAGGAACGGGGTTACCCGCGCACGGCCCGGCACACGCGCCAAAAATCCAAATCCGCTCAGCGGCCCAGATACACCTCGACGACCCGC               >  1:1610513/1‑150                                                                                                                                                             GGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCT              >  2:1614627/1‑150                                                                                                                                                             GGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCT              >  1:1512156/1‑150                                                                                                                                                             GGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAA                                                          <  2:1581870/106‑1                                                                                                                                                             GGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAA                                                          <  2:1582871/106‑1                                                                                                                                                             GGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAA                                                          >  1:1581870/1‑106                                                                                                                                                             GGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAA                                                          >  1:1582871/1‑106                                                                                                                                                              GCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAG                                                                                                   <  2:2074242/64‑1                                                                                                                                                              GCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAG                                                                                                   >  1:2074242/1‑64                                                                                                                                                                 ctgTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCGGATACACCTCGACCACCCGCTCATC          >  1:1893174/4‑150                                                                                                                                                                 TCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGAATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATC          >  1:2358274/1‑150                                                                                                                                                                 TCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCAGGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATC          <  1:522401/150‑1                                                                                                                                                                   TTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTG        >  2:1519633/1‑150                                                                                                                                                                   TTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACC                                                                                      <  2:1214711/72‑1                                                                                                                                                                   TTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACC                                                                                      >  1:1214711/1‑72                                                                                                                                                                    TCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGC       <  1:1108525/150‑1                                                                                                                                                                      GCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCT     <  1:698215/150‑1                                                                                                                                                                         GGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCA  >  1:317233/1‑150                                                                                                                                                                            AAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCA  <  2:598488/147‑1                                                                                                                                                                            AAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCA  >  1:598488/1‑147                                                                                                                                                                                                                                                                                                                                ACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5513143‑5513315 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgccggcctcttcgcgggtaaACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCA  <  NC_002947/5513371‑5513227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.