New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5756156	116 (1.310)	10 (0.120)	8/234	NT	8.2%	coding (1214/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
	?	NC_002947	= 5756173	113 (1.340)					coding (1231/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG

GGCCGGGCAATGTGCGACAGATGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC‑TGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5756003‑5756156 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccaAGGCCTGGTCGGCCCACTGGCGCAGGGCCTGCTCCCAGTTGGTTACCGGCGCGGCATCGTGTGGCAGGTTCAGCAGTTCTGGTGGCAGGTCGCCGATCAGCACTTCGCGGCTGGAGGCCATCACGGTGATCCAGCGGCAGGTGTTCTC  <  NC_002947/5756173‑5756026                                                                                                                                                                                                                                                                                                                 GGCCGGGCAATGTGCGACAGATGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCCGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC‑TGC                                                                                                                                                          <  2:792960/150‑1                      TGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCG‑CGCGCCAAGGCCTGGTCGGCCCAC                                                                                                                                     <  1:1972136/150‑1                             CACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGCCCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCACCTGGGAGCAGGCAC‑TGCGCCAAGGCCTGGTCGGCCCACTGGCGCA                                                                                                                              <  1:883986/150‑1                             CACCGGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC‑TTCGCCAAGGCCTGGTCGGCCCACTGGCGCA                                                                                                                              <  2:246032/150‑1                                CTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCCACCTCCTACCAGAACTGCTGACCCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCGCGCGCCAAGGCCTGGTCGGCCCACTGGCGCAGG                                                                                                                            <  1:163040/150‑1                                      CTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCCGCGCGCCAAGGCCTGGTCGGCCCACTGGCGCAGGGCCTGC                                                                                                                      <  1:1618185/150‑1                                         GATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC‑TGCGCCAAGGCCTGGTCGGCCCACTGGCGCAGGGCCTGCTCCC                                                                                                                  <  2:159594/150‑1                                                               CGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC‑TGCGCCAAGGCCTGGTCGGCCCACTGGCGCAG                                                                                                                             <  1:1613367/117‑1                                                               CGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC‑TGCGCCAAGGCCTGGTCGGCCCACTGGCGCAG                                                                                                                             >  2:1613367/1‑117                                                                                                                ACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC‑TGCGCCAAGGCCTGGTCGGCCCACTGGCGCAGG                                                                                                                            <  1:2036942/69‑1                                                                                                                ACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC‑TGCGCCAAGGCCTGGTCGGCCCACTGGCGCAGG                                                                                                                            >  2:2036942/1‑69                                                                                                                                                        GCCAAGGCCTGGTCGGCCCACTGGCGCAGGGCCTGCTCCCAGTTGGTTACCGGCGCGGCATCGTGTGGCAGGTTCAGCAGTTCTGGTGGCAGGTCGCCGATCAGCACTTCGCGGCTGGAGGCCATCACGGTGATCCAGCGGCAGGTGTTC    <  2:1054530/150‑1                                                                                                                                                        GCCAAGGCCTGGTCGGCCCACTGGCGCAGGGCCTGCTCCCAGTTGGTTACCGGCGCGGCATCGTGTGGCAGGTTCAGCAGTTCTGGTGGCAGGTCGCCGATCAGCACTTCGCGGCTGGAGGCCATCACGGTGATCCAGCGGCAGGTGTTC    <  2:976675/150‑1                                                                                                                                                         CCAAGGCCTGGTCGGCCCACTGGCGCAGGGCCTGCTCCCAGTTGGTTACCGGCGCGGCATCGTGTGGCAGGTTCAGCAGTTCTGGTGGCAGGTCGCCGATCAGCACTTCGCGGCTGGAGGCCATCACGGTGATCCAGCGGCAGGTGTTCT   >  2:2093096/1‑150                                                                                                                                                          CAAGGCCTGGTCGGCCCACTGGCGCAGGGCCTGCTCCCAGTTGGTTACCGGCGCGGCATCGTGTGGCAGGTTCAGCAGTTCTGGTGGCAGGTCGCCGATCAGCACTTCGCGGCTGGAGGCCATCACGGTGATCCAGCGGCAGGTGTTCTC  >  2:2144895/1‑150                                                                                                                                                                                                                                                                                                                 GGCCGGGCAATGTGCGACAGATGGAGAACACCTGCCGCTGGATCACCGTGATGGCCTCCAGCCGCGAAGTGCTGATCGGCGACCTGCCACCAGAACTGCTGAACCTGCCACACGATGCCGCGCCGGTAACCAACTGGGAGCAGGCCC‑TGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5756003‑5756156 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccaAGGCCTGGTCGGCCCACTGGCGCAGGGCCTGCTCCCAGTTGGTTACCGGCGCGGCATCGTGTGGCAGGTTCAGCAGTTCTGGTGGCAGGTCGCCGATCAGCACTTCGCGGCTGGAGGCCATCACGGTGATCCAGCGGCAGGTGTTCTC  <  NC_002947/5756173‑5756026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.