New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5870315	71 (0.800)	5 (0.060)	5/244	NT	7.6%	intergenic (+20/+114)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	= 5870410	52 (0.590)					intergenic (+115/+19)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator

GTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5870236‑5870315 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGA  <  NC_002947/5870410‑5870309                                                                                                                                                                                        GTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGG                                  >  1:1904609/1‑150        GCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCCTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGT                           <  2:1570416/150‑1                                ATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTA                                    <  1:2085354/117‑1                                ATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTA                                    >  2:2085354/1‑117                                 TTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGA  <  2:1904609/150‑1                                                                                                                                                                                        GTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5870236‑5870315 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGA  <  NC_002947/5870410‑5870309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.