| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5874614 | 102 (1.150) | 5 (0.060) | 5/224 | NT | 5.1% | intergenic (‑50/+98) | PP_5148/ilvA‑II | membrane protein/threonine deaminase |
| ? | NC_002947 | = 5874674 | 94 (1.170) | intergenic (‑110/+38) | PP_5148/ilvA‑II | membrane protein/threonine deaminase | |||||
GCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5874457‑5874614‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcttGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGCACATCATC < NC_002947/5874674‑5874526 GCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTT < 2:1934930/149‑1GCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTT > 1:1934930/1‑149GCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCAGCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTC < 1:2221562/150‑1 CCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCG > 2:481137/1‑150 CCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCG > 2:322483/1‑150 CCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGC < 2:1114400/150‑1 TGACGGCGAGCGCGCGAGGGCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTCGTCAGGTGTTCCATCTCTCGGTCGGCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGG < 2:157229/150‑1 TGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGG < 2:1796051/150‑1 GGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTT > 1:975018/1‑150 CCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGG < 2:81322/107‑1 CCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGG > 1:81322/1‑107 CAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGT‑GTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTACCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTT < 1:767702/150‑1 GCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCG < 1:469618/84‑1 GCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCG > 2:469618/1‑84 ATGATGTGCAGGGTCTTGACCCGGGTTAAGTGTTTCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCATTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAA < 1:2332443/150‑1 TCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTATGCCCGCGAAGAAG < 2:2194044/150‑1 AGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGC > 2:1226562/1‑117 AGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGC < 1:1226562/117‑1 CATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGG < 1:2033750/49‑1 CATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGG > 2:2033750/1‑49 GCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGCACATC > 2:638410/1‑150 GCTTGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTAACACAACATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCAGGCTCAAGACCCTGCACATC > 1:1010962/1‑150 TGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCTGCGAAGAAGCTACCGCAAAATGGCAGTTTAAGGACGACCGCAAGAGGTAACACCTGACCACGCTCAAGACCCTGCACATGATC > 1:1455521/1‑150 TGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGCACATCATC < 1:1050126/150‑1 GCCCTGACGGCGAGCGCGCCAGGTCCAGATCGCCAGGCCCAGGGCGCCCAGAAACAGCAGCGCGGTGGCGATGATGTGCAGGGTCTTGAGCGTGGTCAGGTGTTCCATCTCTCGGTCGTCCTTAAACTGGCATTTTGCGGTAGCTTCTTCGCGGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5874457‑5874614‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcttGCCCGCTCCCACAGGTACTGCGCAGGCCTCAAGGCCTGAGATACCTTGGCAGGAGCGGGTAAGCCCGCGAAGAAGCTACCGCAAAATGCCAGTTTAAGGACGACCGAGAGATGGAACACCTGACCACGCTCAAGACCCTGCACATCATC < NC_002947/5874674‑5874526 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |