New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5897799 =	76 (0.860)	9 (0.130)	11/192	NT	14.4%	intergenic (‑143/+91)	PP_5172/PP_5173	hypothetical protein/RND family transporter
	?	NC_002947	5897875 =	48 (0.700)					intergenic (‑219/+15)	PP_5172/PP_5173	hypothetical protein/RND family transporter

GTGGCGACCTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5897973‑5897799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgcgggtaaacccgctcctaccagGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGC  >  NC_002947/5897875‑5898023                                                                                                                                                                                                                                                                                                                                      GTGGCGACCTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTAT                                                                                                                                                                                >  1:1083563/1‑150 GTGGCGACCTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTAT                                                                                                                                                                                <  1:196181/150‑1    GCGACCTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCACGAATGCGATGGTGAATCGCCCACCGTATTCG                                                                                                                                                                             >  2:2109029/1‑150       ACCTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGG                                                                                                                                                                          <  2:1752552/150‑1       ACCTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                          <  1:326095/150‑1       ACCTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                          <  2:1017937/150‑1        CCTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGG                                                                                                                                                                         <  2:975559/150‑1         CTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGT                                                                                                                                                                        >  1:1163837/1‑150                 CGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGC                                                                                                                                                                <  1:2037222/150‑1                  GCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCT                                                                                                                                                               >  2:950454/1‑150                         TTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                          <  2:2260194/132‑1                         TTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                          >  1:2260194/1‑132                                        TACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG                                                                                                                                                    >  2:2298452/1‑139                                        TACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGG                                                                                                                                                    <  1:2298452/139‑1                                                          ATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                          <  1:1211916/99‑1                                                          ATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                          >  2:1211916/1‑99                                                                GAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                          >  2:1043817/1‑93                                                                GAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                          <  1:1043817/93‑1                                                                                                GCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                          >  1:2260339/1‑61                                                                                                  CCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGG                                                                                                                                                                         >  2:743724/1‑60                                                                                                  CCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGG                                                                                                                                                                         <  1:743724/60‑1                                                                                                  CCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                          <  1:2395987/59‑1                                                                                                  CCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGG                                                                                                                                                                          >  2:2395987/1‑59                                                                                                                       CCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGG                                                                                                  <  1:270731/110‑1                                                                                                                       CCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGG                                                                                                  >  2:270731/1‑110                                                                                                                        CGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGC                                                                                                                        <  1:1016234/87‑1                                                                                                                        CGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGC                                                                                                                        >  2:1016234/1‑87                                                                                                                         GCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGC                                                                                                                                  <  1:2369005/76‑1                                                                                                                         GCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGC                                                                                                                                  >  2:2369005/1‑76                                                                                                                           GAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCT                                                                                                                                        <  2:354023/68‑1                                                                                                                           GAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCT                                                                                                                                        >  1:354023/1‑68                                                                                                                                      TGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCC                                           >  2:641561/1‑150                                                                                                                                                           GGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCAT                      >  1:578446/1‑150                                                                                                                                                             GTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCCTACGCCATGa                    <  1:165970/150‑2                                                                                                                                                             GTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCCTACGCCATGa                    <  2:253821/150‑2                                                                                                                                                              TAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGG                   <  1:2304649/150‑1                                                                                                                                                                 ACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGGGTGTTTCTGCGGCTCGGGGATCTTGTACCAGGCCACGTACAGCGGCGGCCGGAAAAGCAGCGTCAGCAAGGGCGCCACGATGATCCGAACAATCATGGCGTAAGCCATGGGGgc                >  1:942071/1‑148                                                                                                                                                                  CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCC               <  1:975559/150‑1                                                                                                                                                                  CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAC                                                                           <  2:868459/90‑1                                                                                                                                                                  CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAC                                                                           >  1:868459/1‑90                                                                                                                                                                   CCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCC              >  1:1636852/1‑150                                                                                                                                                                   CCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCC              >  2:1356367/1‑150                                                                                                                                                                   CCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCC              >  1:834049/1‑150                                                                                                                                                                   CCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAA                                                             <  1:2169383/103‑1                                                                                                                                                                   CCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAA                                                             >  2:2169383/1‑103                                                                                                                                                                         CTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTTGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGC                 <  1:1895990/141‑1                                                                                                                                                                         CTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTTGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGC                 >  2:1895990/1‑141                                                                                                                                                                          TACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACAC       >  1:2173349/1‑150                                                                                                                                                                            CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAA          >  1:1882290/1‑145                                                                                                                                                                            CCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAA          <  2:1882290/145‑1                                                                                                                                                                             CAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCA                                                                       >  1:396652/1‑83                                                                                                                                                                             CAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCA                                                                       <  2:396652/83‑1                                                                                                                                                                               GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGC  <  1:1323708/150‑1                                                                                                                                                                                                                                                                                                                                      GTGGCGACCTTGCTGACGCTGCTGTTCCTGCCGGCGCTGTACGTGGCCTGGTACAAGATCCGCGAGCCGCAGAAACACGCCTGAAGGCCCATATGGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5897973‑5897799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgcgggtaaacccgctcctaccagGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGC  >  NC_002947/5897875‑5898023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.