| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5990872 | 56 (0.630) | 9 (0.110) | 8/238 | NT | 12.3% | intergenic (‑150/‑79) | ycaC‑III/PP_5249 | putative hydrolase/LysR family transcriptional regulator |
| ? | NC_002947 | = 5990920 | 74 (0.860) | intergenic (‑198/‑31) | ycaC‑III/PP_5249 | putative hydrolase/LysR family transcriptional regulator | |||||
ATGGTCTGTGCTCCTAAGGGTTATGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5990721‑5990872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGACACAGCCCCTACAAATCCATCGTTCATAAATCAGAACGCTAAAGCCAGATTCTGCTAACTACCGCCGCAAAGGTGATGATTTTAATCTGTGCCCATCAACGC < NC_002947/5990920‑5990772 ATGGTCTGTGCTCCTAAGGGTTATGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGAGGGATTTGTAGGGGCT > 1:848701/1‑150 TCCTAAGGGTTATGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCT < 2:941384/139‑1 TCCTAAGGGTTATGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCT > 1:941384/1‑139 GATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGACACAGCC < 2:2228598/150‑1 GCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGA > 1:1964368/1‑132 GCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGA < 2:1964368/132‑1 GCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGC > 2:771253/1‑108 GCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGC < 1:771253/108‑1 TGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGCCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGA < 1:2165549/93‑1 TGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGCCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGA > 2:2165549/1‑93 TGATTTATGAACGATGGATTTGTAGGGGCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGA < 1:1723146/73‑1 TGATTTATGAACGATGGATTTGTAGGGGCTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGA > 2:1723146/1‑73 CTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGACACAGCCCCTACAAATCCATCGTTCATAAATCAGAACGCTAAAGCCAGATTCTGCTAACTACCGCCGCAAAGGTGATGATTTTAATCTGTG > 2:1223583/1‑142 CTGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGACACAGCCCCTACAAATCCATCGTTCATAAATCAGAACGCTAAAGCCAGATTCTGCTAACTACCGCCGCAAAGGTGATGATTTTAATCTGTG < 1:1223583/142‑1 TGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGACACAGCCCCTACAAATCCATCGTTCATAAATCAGAACGCTAAAGCCAGATTCTGCTAACTACCGCCGCAAAGGTGATGATTTTAATCTGTGCCCATCAAC < 1:1931544/150‑1 TGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGACACAGCCCCTACAAATCCATCGTTCATAAATCAGAACGCTAAAGCCAGATTCTGCTAACTACCGCCGCAAAGGTGATGATTTTAATCTGTGCCCATCAAC < 2:613314/150‑1 TGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGACACAGCCCCTACAAATCCATCGTTCATAAATCAGAA < 1:247319/86‑1 TGTACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGACACAGCCCCTACAAATCCATCGTTCATAAATCAGAA > 2:247319/1‑86 TACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGACACAGCCCCTAC < 2:1853578/60‑1 TACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGACACAGCCCCTAC > 1:1853578/1‑60 TACCGGCCGCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGACAGAGCCCCTACAAATCCATCGTTCATAAATCAGAACGCTAAAGCCAGATTCTGCTAACTACCGCCGCAAAGGTGATGATTTTAATCTGTGCCCATCAACGC > 2:1898233/1‑150 ATGGTCTGTGCTCCTAAGGGTTATGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5990721‑5990872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtACCGGCCTCTTCGCTCGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGACACAGCCCCTACAAATCCATCGTTCATAAATCAGAACGCTAAAGCCAGATTCTGCTAACTACCGCCGCAAAGGTGATGATTTTAATCTGTGCCCATCAACGC < NC_002947/5990920‑5990772 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |