New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6000988	53 (0.600)	5 (0.070)	5/186	NT	11.5%	intergenic (+39/+70)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	= 6001022	37 (0.550)					intergenic (+73/+36)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase

GCAGCGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6000820‑6000988 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtaaacccgctcctacaGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAACGACTCCCGG  <  NC_002947/6001022‑6000877                                                                                                                                                                                                                                                                                                                             GCAGCGTGGCGAAGGGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGC                                                                                                                                                                       >  2:1297717/1‑150  CAGCGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCG                                                                                                                                                                      >  1:814503/1‑150   cGCGGGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTGCGCGG                                                                                                                                                                     <  1:1192086/149‑1   AGCGTGGCGAAGTGCAGACGGTGTTGAGCAAATTGCCGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAATTGTGCCTGTGCCGGCCTCTTCGCGG                                                                                                                                                                     <  2:793383/150‑1       TGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAA                                                                                                                                                                 >  2:1240555/1‑150                 CAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCT                                                                                                                                                       <  2:1765397/150‑1                  AGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTA                                                                                                                                                      >  2:1780725/1‑150                  AGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTA                                                                                                                                                      <  1:118830/150‑1                  AGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGGTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTA                                                                                                                                                      >  2:945180/1‑150                   GACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                     >  2:2187627/1‑150                                       AGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCT                                                                                                                                                                           <  2:997158/108‑1                                       AGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCT                                                                                                                                                                           >  1:997158/1‑108                                        GCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCGTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCt                                                                                                                                >  1:297392/1‑149                                                                    TTGTTGTGGCAGAAGCCGGCTTGAATCAAGGAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTT                                                                                                    <  2:297392/150‑1                                                                            GCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGC                                                                                                                                                           >  1:1907363/1‑87                                                                            GCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGC                                                                                                                                                           <  2:1907363/87‑1                                                                                AAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCATCAGTCTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGA                                                                                        <  1:1954051/150‑1                                                                                               AAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAG                                                                                                          >  2:948421/1‑117                                                                                               AAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAG                                                                                                          <  1:948421/117‑1                                                                                                                                           tggtCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCCCCACAGCCCGCTCAACCGGTGCACTACTTGTAGGAGCGGGTGTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCC                             >  2:713877/5‑150                                                                                                                                             GCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGG                           >  2:1593096/1‑150                                                                                                                                             GCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC                                                                           <  1:1668916/102‑1                                                                                                                                             GCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC                                                                           >  2:1668916/1‑102                                                                                                                                               CTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCT                         >  2:2288598/1‑150                                                                                                                                                TCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTT                        >  2:1445525/1‑150                                                                                                                                                TCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGG                                                                                                                              >  2:2332257/1‑48                                                                                                                                                TCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGG                                                                                                                              <  1:2332257/48‑1                                                                                                                                                  TTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCT                      >  1:1240555/1‑150                                                                                                                                                   TCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTG                     <  1:1593096/150‑1                                                                                                                                                      gGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAA                  <  1:502298/149‑1                                                                                                                                                          TAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAAC              >  2:260872/1‑150                                                                                                                                                           ttACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTACACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGC                          >  1:972303/3‑137                                                                                                                                                           ttACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTACACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGC                          <  2:972303/135‑1                                                                                                                                                            AACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAA            <  1:1445525/150‑1                                                                                                                                                            AACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCC                                                >  1:510580/1‑114                                                                                                                                                            AACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCC                                                <  2:510580/114‑1                                                                                                                                                            AACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCA                                                       >  2:1774729/1‑107                                                                                                                                                            AACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCA                                                       <  1:1774729/107‑1                                                                                                                                                             ACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAAC           <  1:2288598/150‑1                                                                                                                                                              CCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAACG          >  1:904996/1‑150                                                                                                                                                              CCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAACG          >  2:1030662/1‑150                                                                                                                                                              CCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAACG          >  2:2404087/1‑150                                                                                                                                                              CCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGAT                                    <  2:801500/124‑1                                                                                                                                                              CCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGAT                                    >  1:801500/1‑124                                                                                                                                                              CCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTAAGAAAGCCACCATTCTGGAGGTAAGCCGGCTTCTGCAACAACAACG          >  1:539250/1‑150                                                                                                                                                              CCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCAC                                                                                                                      >  2:2282348/1‑42                                                                                                                                                              CCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCAC                                                                                                                      <  1:2282348/42‑1                                                                                                                                                               CCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGA                                     >  1:2272247/1‑122                                                                                                                                                               CCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGA                                     <  2:2272247/122‑1                                                                                                                                                                 GCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAG                                                                             <  2:1224/80‑1                                                                                                                                                                 GCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAG                                                                             >  1:1224/1‑80                                                                                                                                                                     CTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAACGACTCCCc   >  2:1648328/1‑149                                                                                                                                                                      TACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAACGACTCCCGG  <  2:904996/150‑1                                                                                                                                                                       ACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGA                                     <  2:228068/114‑1                                                                                                                                                                       ACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGA                                     >  1:228068/1‑114                                                                                                                                                                                                                                                                                                                             GCAGCGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6000820‑6000988 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtaaacccgctcctacaGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAACGACTCCCGG  <  NC_002947/6001022‑6000877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.