| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6002391 = | 157 (1.770) | 11 (0.140) | 10/226 | NT | 7.9% | intergenic (‑35/+111) | amaA/amaB | L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase |
| ? | NC_002947 | 6002465 = | 111 (1.370) | intergenic (‑109/+37) | amaA/amaB | L‑pipecolate oxidase/L‑piperidine‑6‑carboxylate dehydrogenase | |||||
ACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6002548‑6002391‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacccgcgaaCCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGGCC > NC_002947/6002465‑6002609 ACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTA < 1:394906/150‑1 CTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTAC > 2:1401608/1‑150 taaTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCGCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACC > 1:1035122/4‑150 ACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCC < 2:130410/150‑1 GCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGA > 2:827323/1‑150 CCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTAC > 1:1313066/1‑134 CCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTAC < 2:1313066/134‑1 GCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAg > 2:401220/1‑102 GCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAAg < 1:401220/103‑2 CCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTAC > 1:2209558/1‑86 CCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTAC < 2:2209558/86‑1 CCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACG > 2:2297336/1‑150 CCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACG > 1:75266/1‑150 GCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGC > 1:1810072/1‑136 GCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGC < 2:1810072/136‑1 CTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTG < 1:2297336/150‑1 TACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCG < 1:1761787/120‑1 TACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCG > 2:1761787/1‑120 ACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAG > 1:1259977/1‑80 ACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAG < 2:1259977/80‑1 CAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTCTACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTC > 2:2001871/1‑150 GAGCGGGTTTACCCGCAAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAG > 1:884789/1‑150 ACCCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCAC < 2:714108/150‑1 CCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGG < 1:1693187/150‑1 CCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGG < 2:451653/150‑1 CCGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGG < 1:1491311/150‑1 CGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGTTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGGC > 1:2330543/1‑150 CGCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGGC < 1:2001871/150‑1 GCGAACCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGGCC < 2:2270012/150‑1 ACTACTCGCGCGAGCTGCCGCTGGCGCAGGGTATCGTGTTCGACTGATGTATTGATGCTGCATGGCCGGGGGCCTGGCCCCCGGTTCGCGGGTAGACCCGCTCCTACAGGGTTCGTCCAAGCGACACCGACCCCTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6002548‑6002391‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacccgcgaaCCGGGGGCCAGGCCCCCGGCCATGCAGCATCAATACATCAGTCGAACACGATACCCTGCGCCAGCGGCAGCTCGCGCGAGTAGTTCACGGTGTTGGTCTGGCGACGCATGTAGCCTTTCCAGGCATCCGAGCCCGACTCACGGCC > NC_002947/6002465‑6002609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |