| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6003867 = | 115 (1.300) | 7 (0.080) | 5/234 | NT | 6.3% | coding (126/1491 nt) | amaB | L‑piperidine‑6‑carboxylate dehydrogenase |
| ? | NC_002947 | 6003882 = | 99 (1.180) | coding (111/1491 nt) | amaB | L‑piperidine‑6‑carboxylate dehydrogenase | |||||
CCCATCACCGATGTAGGAGATGCACAAATGGTTGCTGGATTGCTCGAGCGCCTTGGCGTTGCCGCCGAGGCTTACACCCAGGGCGACTACCCTGTTCACACGCCGATCGACGGCAGCCAGATCGCCTCGGTGAAACTGCTCGGCAAGGCCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6004019‑6003867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgagCAGTTTCACCGAGGCGATCTGGCTGCCGTCGATCGGCGTGTGAACAGGGTAGTCGCCCTGGGTGTAAGCCTCGGCGGCAACGCCAAGGCGCTCGAGCAATCCAGCAACCATTTGTGCATCTCCTACATCGGTGATGGGGTGGAAAAA > NC_002947/6003882‑6004028 CCCATCACCGATGTAGGAGATGCACAAATGGTTGCTGGATTGCTCGAGCGCCTTGGCGTTGCCGCCGAGGCTTACACCCAGGGCGACTACCCTGTTCACACGCCGATCGACGGCAGCCAGATCGCCTCGGTGAAACTGCTCGGCAAGGCC > 2:492888/1‑150CCCATCACCGATGTAGGAGATGCACAAATGGTTGCTGGATTGCTCGAGCGCCTTGGCGTTGCCGCCGAGGCTTACACCCAGGGCGACTACCCTGTTCACACGCCGATCGACGGCAGCCAGATCGCCTCGGTGAAACTGCTCGGCAAGGCC > 1:1602413/1‑150CCCATCACCGATGTAGGAGATGCACAAATGGTTGCTGGATTGCTCGAGCGCCTTGGCGTTGCCGCCGAGGCTTACACCCAGGGCGACTACCCTGTTCACACGCCGATCGACGGCAGCCAGATCGCCTCGGTGAAACTGCTCGGCAAGGCC < 1:492888/150‑1CCCATCACCGATGTAGGAGATGCACAAATGGTTGCTGGATTGCTCGAGCGCCTTGGCGTTGCCGCCGAGGCTTACACCCAGGGCGACTACCCTGTTCACACGCCGATCGACGGCAGCCAGATCGCCTCGGTGAAACTGCTCGGCAAGGCC > 1:811936/1‑150 CCATCACCGATGTAGGAGATGCACAAATGGTTGCTGGATTGCTCGAGCGCCTTGGCGTTGCCGCCGAGGCTTACACCCAGGGCGACTACCCTGTTCACACGCCGATCGACGGCAGCCAGATCGCCTCGGTGAAACTGCTCGGCAAGGCCG > 2:2098013/1‑150 CATCACCGATGTAGGAGATGCACAAATGGTTGCTGGATTGCTCGAGCGCCTTGGCGTTGCCGCCGAGGCTTACACCCAGGGCGACTACCCTGTTCACACGCCGATCGACGGCAGCCAGATCGCCTCGGTGAAACTGCTCGGCAAGGCCGA > 2:1099447/1‑150 CATCACCGATGTAGGAGATGCACAAATGGTTGCTGGATTGCTCGAGCGCCTTGGCGTTGCCGCCGAGGCTTACACCCAGGGCGACTACCCTGTTCACACGCCGATCGACGGCAGCCAGATCGCCTCGGTGAAACTGCTCGGCAAGG > 1:1744965/1‑146 CATCACCGATGTAGGAGATGCACAAATGGTTGCTGGATTGCTCGAGCGCCTTGGCGTTGCCGCCGAGGCTTACACCCAGGGCGACTACCCTGTTCACACGCCCATCGACGGCAGCCAGATCGCCTCGGTGAAACTGCTCGGCAAGG < 2:1744965/146‑1 ACCCAGGGCGACTACCCTGTTCACACGCCGATCGACGGCAGCCAGATCGCCTCGGTGAAACTGCTCGGCCTTGCCGAGCAGTTTCACCGA > 1:2208415/1‑90 ACCCAGGGCGACTACCCTGTTCACACGCCGATCGACGGCAGCCAGATCGCCTCGGTGAAACTGCTCGGCCTTGCCGAGCAGTTTCACCGA < 2:2208415/90‑1 TCGACGGCAGCCAGATCGCCTCGGTGAAACTGCTCGGCCTTGCCGAGCAGTTTCACCGAG > 2:683162/1‑60 TCGACGGCAGCCAGATCGCCTCGGTGAAACTGCTCGGCCTTGCCGAGCAGTTTCACCGAG < 1:683162/60‑1 TGCTCGGCAAGGCCGAGCAGTTTCACCGAGGCGATCTGGCTGCCGTCGATCGGCGTGTGAACAGGGTAGTCGCCCTGGGTGTAAGCCTCGGCGGCAACGCCAAGGCGCTCGAGCAATCCAGCAACCATTTGTGCATCTCCTACATCGGTG > 2:850757/1‑150 TGCTCGGCAAGGCCGAGCAGTTTCACCGAGGCGATCTGGCTGCCGTCGATCGGCGTGTGAACAGGGTAGTCGCCCTGGGTGTAAGCCTCGGCGGCAACGCCAAGGCGCTCGAGCAATCCAGCAACCATTTGTGCATCTCCTACATCGGTG > 2:2055755/1‑150 TGCTCGGCAAGGCCGAGCAGTTTCACCGAGGCGATCTGGCTGCCGTCGATCGGCGTGTGAACAGGGTAGTCGACCTGGGTGTAAGCCTCGGCGGCAACGCCAAGGCGCTCGAGCAATCCAGCAACCATTTGTGCATCTCCTACATCGGTG > 2:1399724/1‑150 GCCGAGCAGTTTCACCGAGGCGATCTGGCTGCCGTCGATCGGCGTGTGAACAGGGTAGTCGCCCTGGGTGTAAGCCTCGGCGGCAACGCCAAGGCGCTCGAGCAATCCAGCAACCATTTGTGCATCTCCTACATCGGTGATGGGGTGGAA < 1:1534845/150‑1 GCCGAGCAGTTTCACCGAGGCGATCTGGCTGCCGTCGATCGGCGTGTGAACAGGGTAGTCGCCCTGGGTGTAAGCCTCGGCGGCAACGCCAAGGCGCTCGAGCAATCCAGCAACCATTTGTGCATCTCCTACATCGGTGATGGGGTGGAA < 1:1334801/150‑1 CGAGCAGTTTCACCGAGGCGATCTGGCTGCCGTCGATCGGCGTGTGAACAGGGTAGTCGCCCTGGGTGTAAGCCTCGGCGGCAACGCCAAGGCGCTCGAGCAATCCAGCAACCATTTGTGCATCTCCTACATCGGTGATGGGGTGGAAAA > 1:398426/1‑150 CGAGCAGTTTCACCGAGGCGATCTGGCTGCCGTCGATCGGCGTGTGAACAGGGTAGTCGCCCTGGGTGTAAGCCTCGGCGGCAACGCCAAGGCGCTCGAGCAATCCAGCAACCATTT < 2:1354352/117‑1 CGAGCAGTTTCACCGAGGCGATCTGGCTGCCGTCGATCGGCGTGTGAACAGGGTAGTCGCCCTGGGTGTAAGCCTCGGCCGGAACGCCAAGGCGCTCGAGCAATCCAGCAACCATTT > 1:1354352/1‑117 GAGCAGTTTCACCGAGGCGATCTGGCTGCCGTCGATCGGCGTGTGAACAGGGTAGTCGCCCTGGGTGTAAGCCTCGGCGGCAACGCCAAGGCGCTCGAGCAATCCAGCAACCATTTGTGCATCTCCTACATCGGTGATGGGGTGGAAAAA < 2:1908146/150‑1 GAGCAGTTTCACCGAGGCGATCTGGCTGCCGTCGATCGGCGTGTGAACAGGGTAGTCGCCCTGGGTGTAAGCCTCGGCGGCAACGCCAAGGCGCTCGAGCAATCCAGCAACCATTTGTGCATCTCCTACATCGGTGATGGGGTGGAAAAA > 1:325247/1‑150 GAGCAGTTTCACCGAGGCGATCTGGCTGCCGTCGATCGGCGTGTGAACAGGGTAGTCGCCCTGGGTGTAAGCCTCGGCGGCAACGCCAAGGCGCTCGAGCAATCCAGCAACCATTTGTGCATCTCCTACATCGGTGATGG > 1:57456/1‑140 GAGCAGTTTCACCGAGGCGATCTGGCTGCCGTCGATCGGCGTGTGAACAGGGTAGTCGCCCTGGGTGTAAGCCTCGGCGGCAACGCCAAGGCGCTCGAGCAATCCAGCAACCATTTGTGCATCTCCTACATCGGTGATGG < 2:57456/140‑1 CCCATCACCGATGTAGGAGATGCACAAATGGTTGCTGGATTGCTCGAGCGCCTTGGCGTTGCCGCCGAGGCTTACACCCAGGGCGACTACCCTGTTCACACGCCGATCGACGGCAGCCAGATCGCCTCGGTGAAACTGCTCGGCAAGGCCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6004019‑6003867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgagCAGTTTCACCGAGGCGATCTGGCTGCCGTCGATCGGCGTGTGAACAGGGTAGTCGCCCTGGGTGTAAGCCTCGGCGGCAACGCCAAGGCGCTCGAGCAATCCAGCAACCATTTGTGCATCTCCTACATCGGTGATGGGGTGGAAAAA > NC_002947/6003882‑6004028 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |