New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6027969	67 (0.760)	14 (0.190)	11/204	NT	19.0%	intergenic (‑57/+54)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase
	?	NC_002947	= 6027984	64 (0.870)					intergenic (‑72/+39)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase

TGCCGTAGCCCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6027801‑6027969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcaagcccgctcctgca‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGCGCTTGGCGTGAGCATGC  <  NC_002947/6027984‑6027840                                                                                                                                                                                                                                                                                                                              TGCCGTAGCCCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGC                                                                                                                                                                        >  1:1638009/1‑150   CCGTAGCCCCAGGTCTCCAGACGCAGGGATACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATCCCAGTAAGGCGAAGTAGGTACCCCACCGCATTACAGCCTCCCAGCCAATATTGCCAGGGGCCCATTTGCGG                                                                                                                                                                      <  2:236691/150‑1   CCGTAGCCCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGG                                                                                                                                                                      >  1:271808/1‑150         CCCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCCGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGC                                                                                                                                                                <  2:826979/150‑1          CCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCC                                                                                                                                                               <  1:2007050/150‑1           CCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCC                                                                                                                                                              >  1:310468/1‑150              GGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCg                                                                                                                                                           >  1:440195/1‑149                 CTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCC                                                                                                                                                              <  1:393792/144‑1                 CTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCC                                                                                                                                                              >  2:393792/1‑144                 CTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGC                                                                                                                                                                >  2:1227197/1‑142                 CTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGC                                                                                                                                                                <  1:1227197/142‑1                   CCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCTTGCCCGCaaatgg                                                                                                                                                      <  2:1313254/150‑7                                 ACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCA‑‑GGTCTTCGCGACC                                                                                                                                      >  2:1196562/1‑150                                        GCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCGTTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAG                                                                                                                               <  2:1798595/150‑1                                        GCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAG                                                                                                                               <  2:1311028/150‑1                                            GCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGC                                                                                                                           <  1:1712749/150‑1                                            GCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGC                                                                                                                           <  1:1196562/150‑1                                                ACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGATGTGGGTTCGCCAGCTCATTATATCGTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGC                                                                                                                       <  1:285498/150‑1                                                                      TGAGCACCGATGCCAGTAAGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGG                                                                                                                                                                     >  1:2242428/1‑84                                                                      TGAGCACCGATGCCAGTAAGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGG                                                                                                                                                                     <  2:2242428/84‑1                                                                                            GAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCTTCGCGACCGTTGCAGGAGCG                                                                                                                          <  2:1095846/105‑1                                                                                            GAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCTTCGCGACCGTTGCAGGAGCG                                                                                                                          >  1:1095846/1‑105                                                                                                         CAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTT                                                                                                                     <  1:1733440/95‑1                                                                                                         CAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTT                                                                                                                     >  2:1733440/1‑95                                                                                                         CAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGG                                                                                                                         >  2:1062173/1‑91                                                                                                         CAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGG                                                                                                                         <  1:1062173/91‑1                                                                                                                     GCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTG                                                                                                                    >  1:1603246/1‑84                                                                                                                     GCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTG                                                                                                                    <  2:1603246/84‑1                                                                                                                                                      CGGGCAAACCAGCTCTTTCA‑‑GGTCTTCGCGACCGTTGGAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGCGC                 <  1:249202/150‑1                                                                                                                                                       GGGCAAGCCCGCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGC                   >  2:2130232/1‑147                                                                                                                                                       GGGCAAGCCCGCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGC                   <  1:2130232/147‑1                                                                                                                                                               CCGCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGTGCTTGGCGTGA        >  1:71730/1‑150                                                                                                                                                               CCGCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGCGCTTGGCGTGA        <  2:1317024/150‑1                                                                                                                                                                 GCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCGAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTC                                 <  2:1835729/123‑1                                                                                                                                                                 GCTCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCGAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGGACCTACTTCGCCGTACTGGCATCGGTGCTC                                 >  1:1835729/1‑123                                                                                                                                                                   TCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGG                         <  2:344923/129‑1                                                                                                                                                                   TCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGG                         >  1:344923/1‑129                                                                                                                                                                   TCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGG                                                                 <  2:806727/89‑1                                                                                                                                                                   TCCTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGG                                                                 >  1:806727/1‑89                                                                                                                                                                     CTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGTTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGCGCTTGGCGTGAGCATGC  <  2:143143/150‑1                                                                                                                                                                     CTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGC                       >  2:1019226/1‑129                                                                                                                                                                     CTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGC                       >  2:1018666/1‑129                                                                                                                                                                     CTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGC                       <  1:1018666/129‑1                                                                                                                                                                     CTGCA‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGC                       <  1:1019226/129‑1                                                                                                                                                                                                                                                                                                                              TGCCGTAGCCCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6027801‑6027969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcaagcccgctcctgca‑‑GGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGCGCTTGGCGTGAGCATGC  <  NC_002947/6027984‑6027840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.