| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6065594 | 69 (0.780) | 10 (0.120) | 10/236 | NT | 12.9% | coding (439/729 nt) | phoB | two‑component system DNA‑binding response regulator PhoB |
| ? | NC_002947 | = 6065618 | 69 (0.810) | coding (463/729 nt) | phoB | two‑component system DNA‑binding response regulator PhoB | |||||
ACCGCCAAGGGTGAAGAGGACAACAAGATCCAGGGCCTGGAAGTGGGCGCCGACGACTACATCACCAAGCCGTTCTCGCCGCGTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGCCGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6065444‑6065594‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcg‑GGTCGAGCAGCAGGCCGC‑CGACCTCGATCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCGGCGAGAACGGCTTGGTGATGTAGTCGTCGGCGCCCACTTCCAGGCCCTGGATC < NC_002947/6065618‑6065470 ACCGCCAAGGGTGAAGAGGACAACAAGATCCAGGGCCTGGAAGTGGGCGCCGACGACTACATCACCAAGCCGTTCTCGCCGCGTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGAGAGGCGCCGAcc > 1:1047213/1‑148 CCGCCAAGGGTGAAGAGGACAACAAGTTACCTTGCCTGGAAGTGGGCGCCGACGACTACATCACCAAGCCGTTCTCGCCGCGTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGTGAGGCGCCGATCG > 1:1871540/1‑150 ACAACAAGATCCAGGGCCTGGAAGTTGGTGCCGACGACTACATCACCAAGCCGTTCTCGCCGCTTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGCCGATCG‑GGTCGAGCAGCAGGCCGC > 1:328946/1‑150 AACAAGATCCAGGGCCTGGAAGTGGGCGCCGACGACTACATCACCAAGCCGTTCTCGCCGCGTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGCCGATCG‑GGTCGAGCAGCAGGCCGC‑CG > 2:787122/1‑150 ATCCAGGGCCTGGAAGTGGGCGCCGACGACTACATCACCAAGCCGTTCTCGCCGCGTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGCCGATCG‑GGTCGAGCAGCAGGCCGC‑CGACCTCG < 2:1141414/150‑1 cCCAGGGCCTGGAAGTGGGCGCCGACGACTACATCACCAAGCCGTTCTCCCCGCGTTATCGTCTAGCGCGACTGACAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGCCGATCG‑GGTCGAGCAGCAGGCCGC‑CGACCTCGA < 2:328946/149‑1 CCAGGGCCTGGAAGTGGGCGCCGACGACTACATCACCAAGCCGTTCTCGCCGCGTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGCCGATCG‑GGTCGAGCAGCAGGCCGC‑CGACCTCGAT < 1:787122/150‑1 GGCCTGGAAGTGGGCGCCGACGACTACACCACCAAGCCGTTCTCGCCGCGTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGCCGATCG‑GGTCGAGCAGCAGGCCGC‑CGACCTCGATCGGC < 1:2352380/150‑1 TCACCAAGCCGTTCTCGCCGCGTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGCCGATCG‑GGTCGAGCAGCAGGCCGC‑CGACCTCGATC > 1:1560873/1‑119 TCACCAAGCCGTTCTCGCCGCGTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGCCGATCG‑GGTCGAGCAGCAGGCCGC‑CGACCTCGATC < 2:1560873/119‑1 CTCGCCGCGTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGGCCGAGCGACAGCGAGGCGCCGATCG‑GGTCGAGCAGCAGGCCGC‑CGACCTCGATCGGCGCCTCGCTGT > 1:1857053/1‑119 CTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGCCGAT < 1:985637/50‑1 CTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGCCGAT > 2:985637/1‑50 ACAGCGAGGCGCCGATCGAGGTCG‑GCGGCCTGCTGCTCGACC‑CGATCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCGGCGAG > 2:1857053/1‑119 ATCG‑GGTCGAGCAGCAGGCCGC‑CGACCTCGATCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCGGCGAGAACGGCTTGGTGATGTAGTCGTCGGCGCCCACTTCCAGGCCCTGG < 2:686665/150‑1 TCG‑GGTCGAGCAGCAGGCCGC‑CGACCTCGATCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACAAGTTCACGCGGCGAGAACGGCTTGGTGATGTAGTCGTCGGCGCCCACTTCCAGGCCCTGGA > 2:1531059/1‑150 G‑GGTCGAGCAGCAGGCCGC‑CGACCTCGATCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCGGCGAGAACGGCTTGGTGATGTAGTCGTCGGCGCCCACTTCCAGGCCCTGGATC < 1:1608051/150‑1 G‑GGTCGAGCAGCAGGCCGC‑CGACCTCGATCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCGGCGAGAACGGCTTGGTGATGTAGTCGTCGGCGCCCACTTCCAGGCCCTGGATC > 1:1449443/1‑150 G‑GGACGAGCAGCAGGCCGC‑CGACCTCGATCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCGGCGAGAACGGCTTGGTGATGTAGTCGTCGGCGCCCACTTCCAGGCCCTGGATC > 2:1141840/1‑150 ACCGCCAAGGGTGAAGAGGACAACAAGATCCAGGGCCTGGAAGTGGGCGCCGACGACTACATCACCAAGCCGTTCTCGCCGCGTGAACTGGTAGCGCGACTGAAAGCCGTGCTGCGCCGCACTGGCCCGAGCGACAGCGAGGCGCCGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6065444‑6065594‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcg‑GGTCGAGCAGCAGGCCGC‑CGACCTCGATCGGCGCCTCGCTGTCGCTCGGGCCAGTGCGGCGCAGCACGGCTTTCAGTCGCGCTACCAGTTCACGCGGCGAGAACGGCTTGGTGATGTAGTCGTCGGCGCCCACTTCCAGGCCCTGGATC < NC_002947/6065618‑6065470 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |