New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 44508872 (0.810)27 (0.390) 15/192 NT 29.3% intergenic (+58/‑230) PP_0367/PP_0368 hypothetical protein/acyl‑CoA dehydrogenase
?NC_002947 = 445127 74 (1.070)intergenic (+97/‑191) PP_0367/PP_0368 hypothetical protein/acyl‑CoA dehydrogenase

Only 100 of 154 total aligned reads displayed.

GTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAA  >  NC_002947/444980‑445276
                                                                                                                                                    |                                                                                                                                                     
gTCAAGGCATCCGACGAAATGCTTTGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCtt                                                                                                                                                     <  1:1694460‑M2/150‑3 (MQ=255)
 agctcagctttctgtcaaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTc                                                                                                                                                    >  2:1167392‑M1/82‑150 (MQ=255)
  cAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACCCCTACGCCTGAATACTTGCGTCACCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcg                                                                                                                                                   >  2:324769‑M2/1‑146 (MQ=255)
   aaGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgc                                                                                                                                                  >  1:1715059‑M2/1‑145 (MQ=255)
     cagctttctgtcaaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCgg                                                                                                                                                >  1:959539‑M1/78‑150 (MQ=255)
         gccgACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaa                                                                                                                                            >  1:284404‑M2/2‑139 (MQ=255)
            gacgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcc                                                                                                                                         <  1:1822226‑M2/150‑15 (MQ=255)
            gacgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgg                                                                                                                                                <  2:865623‑M2/143‑8 (MQ=255)
                 aaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCgg                                                                                                                                                >  1:538450‑M1/66‑138 (MQ=255)
                 aaTGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctc                                                                                                                                    >  1:516606‑M2/1‑131 (MQ=255)
                 aaTGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctc                                                                                                                                    >  2:1822226‑M2/1‑131 (MQ=255)
                 aaTGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctc                                                                                                                                    <  2:1683298‑M2/150‑20 (MQ=255)
                         gCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaagg                                                                                                                            >  2:1629371‑M2/1‑123 (MQ=255)
                         gCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcc                                                                                                                                         <  1:2334401‑M2/137‑15 (MQ=255)
                         gCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcc                                                                                                                                         >  2:2334401‑M2/1‑123 (MQ=255)
                          ccGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAggg                                                                                                                           <  1:2401910/150‑1 (MQ=255)
                               tcatcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAAAT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgt                                                                                                                      >  1:1594779/1‑150 (MQ=255)
                                catcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTCGGAACGAGCTTGCCCCCTACAGCGTCCGAGCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgtg                                                                                                                     >  1:294164/1‑150 (MQ=255)
                                 atcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtgg                                                                                                                    >  1:1004697/1‑150 (MQ=255)
                                  tcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGAGCATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTCCAAGGGTTTGtggc                                                                                                                   >  2:694431/1‑150 (MQ=255)
                                     acacCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcc                                                                                                                                   >  2:1849511‑M2/1‑111 (MQ=255)
                                      cacCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTGGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtggcatgg                                                                                                               >  1:2129360/1‑150 (MQ=255)
                                             acgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCgg                                                                                                                                                <  2:649490‑M1/73‑1 (MQ=255)
                                             acgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCgg                                                                                                                                                >  1:649490‑M1/38‑110 (MQ=255)
                                               cTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGa                                                                                                      >  2:1273564/1‑150 (MQ=255)
                                                tGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGATAACAATT‑TTGTCTCATCGGGCAACTTCGGTGACGTGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGAt                                                                                                     >  1:1367258/1‑150 (MQ=255)
                                                tGAATACTTGCATCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCAATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGAt                                                                                                     >  2:448617/1‑150 (MQ=255)
                                                    tACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCACGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGc                                                                                                 <  1:2359219/150‑1 (MQ=255)
                                                      cTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCa                                                                                               >  2:212460/1‑150 (MQ=255)
                                                       ttGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGAttt                                                                                                   <  1:1319305/145‑1 (MQ=255)
                                                         gCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCAttt                                                                                            <  2:1004697/150‑1 (MQ=255)
                                                             cATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACATTT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCg                                                                                        <  1:2398426/150‑1 (MQ=255)
                                                             cATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCg                                                                                        <  1:1421942/150‑1 (MQ=255)
                                                              aTCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCATGTCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGt                                                                                       <  2:1174059/150‑1 (MQ=255)
                                                              aTCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGt                                                                                       <  1:845708/150‑1 (MQ=255)
                                                                tcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTc                                                                                                                                                    >  2:1554566‑M1/19‑87 (MQ=255)
                                                                ccccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTc                                                                                         <  2:918846/146‑1 (MQ=255)
                                                                 cccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGc                                                                                    <  2:2239696/150‑1 (MQ=255)
                                                                   cTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGAc                                                                                                         >  2:204391/1‑127 (MQ=255)
                                                                   cTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTATGGTCGGGCCTCttcgcgggcaagcccgctccta                                                                                                                                 <  2:2266858‑M2/103‑23 (MQ=255)
                                                                           gcgcCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCa                                                                          >  2:1439960/1‑150 (MQ=255)
                                                                           gcgcCTGCCTTGTAGGACCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAGGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCa                                                                          <  1:1821171/150‑1 (MQ=255)
                                                                                       TAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGTAAGCAGGGTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATc                                                              >  1:899563‑M1/1‑150 (MQ=255)
                                                                                          GAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCtt                                                           <  1:207286‑M1/150‑1 (MQ=255)
                                                                                            GCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa                                                         >  2:740258‑M1/1‑150 (MQ=255)
                                                                                               GGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAg                                                      <  2:1846250‑M1/150‑1 (MQ=255)
                                                                                                  ttGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggctctgaaataggggatgacgcaagtattcaggcgtaggtgtcga                                                                            <  1:1134026‑M2/125‑76 (MQ=255)
                                                                                                  ttGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcga                                                                            >  2:1134026‑M2/1‑50 (MQ=255)
                                                                                                  ttGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaat                                                                                                               <  1:223295‑M2/90‑41 (MQ=255)
                                                                                                     cccGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgc                                                <  1:793228‑M2/150‑104 (MQ=255)
                                                                                                      ccGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgcc                                               <  1:1505553‑M2/150‑105 (MQ=255)
                                                                                                      ccGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgcc                                               <  2:1905124‑M2/150‑105 (MQ=255)
                                                                                                      ccGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgcc                                               <  2:692763‑M2/150‑105 (MQ=255)
                                                                                                      ccGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcga                                                                            <  2:1714117‑M2/121‑76 (MQ=255)
                                                                                                      ccGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcga                                                                            >  1:1714117‑M2/1‑46 (MQ=255)
                                                                                                      ccGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaa                                                                                                 <  1:1808567‑M2/100‑55 (MQ=255)
                                                                                                      ccGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgagcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgcc                                               <  1:1983060‑M2/150‑105 (MQ=255)
                                                                                                      CCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCt                                                <  2:1413680‑M1/149‑1 (MQ=255)
                                                                                                      CCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTg                                               <  2:180702‑M1/150‑1 (MQ=255)
                                                                                                       cgcgAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggat                                                  >  1:1821833‑M2/1‑45 (MQ=255)
                                                                                                       cgcgAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggat                                                  <  2:1821833‑M2/146‑102 (MQ=255)
                                                                                                       CGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGa                                              >  2:294164‑M1/1‑150 (MQ=255)
                                                                                                       CGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGa                                              <  2:629295‑M1/150‑1 (MQ=255)
                                                                                                       CGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGa                                              >  2:207286‑M1/1‑150 (MQ=255)
                                                                                                        GCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAg                                             >  1:212460‑M1/1‑150 (MQ=255)
                                                                                                            ATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTaa                                         <  2:1257028‑M1/150‑1 (MQ=255)
                                                                                                            ATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTGCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTaa                                         <  1:1942016‑M1/150‑1 (MQ=255)
                                                                                                                 tCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTGGCAGGCACGCCCGCTCCTACAAGGATTTGTGGCATGTCATGACTCATTTGCCATTTTTCGTGCAGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTAAGCTAAACGTa                                    >  2:898021/1‑150 (MQ=255)
                                                                                                                 tCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgt                                                                                                                      >  2:1713985/1‑68 (MQ=255)
                                                                                                                  ccGACCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAg                                             >  2:281834/1‑140 (MQ=255)
                                                                                                                  ccGACCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAg                                             <  1:281834/140‑1 (MQ=255)
                                                                                                                  ccGACCAGACAA‑AATTGTTGTCTGGTCGGGCCTCTTCGACGGAACGTCGGGTCCAACAAGGGTTTGTGGCAGTGCATGACTGATTTGCCATTTTTCGTGTCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTaa                                   >  1:1854591/1‑150 (MQ=255)
                                                                                                                    gATCAGACAACAATT‑TTGTCTGGTCGGGCGCAttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgccttgacgacctttgc                                 <  2:406168‑M2/150‑119 (MQ=255)
                                                                                                                    gATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCa                                                                          <  1:1070598/109‑1 (MQ=255)
                                                                                                                    gATCAGACAACAATT‑TTGTCTGGTCGGACGCAttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgta                                                                                    <  2:2177577‑M2/99‑68 (MQ=255)
                                                                                                                        aGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCa                             <  1:694431/150‑1 (MQ=255)
                                                                                                                         gACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTaaa                                                                               >  2:455236/1‑99 (MQ=255)
                                                                                                                         gACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATc                                                              >  1:1895934/1‑116 (MQ=255)
                                                                                                                          acaacaATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCaaa                           <  1:451557/150‑1 (MQ=255)
                                                                                                                            aacaaTT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCa                                                                          >  2:1800523/1‑101 (MQ=255)
                                                                                                                            aacaaTT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGaaa                                                   <  1:576447/124‑1 (MQ=255)
                                                                                                                            aacaaTT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGaaa                                                   >  2:576447/1‑124 (MQ=255)
                                                                                                                            aacaaTT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAaaca                         >  1:403810/1‑150 (MQ=255)
                                                                                                                                 tt‑ttGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGt                    <  1:1654978/150‑1 (MQ=255)
                                                                                                                                  t‑ttGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGtt                   <  1:726253/150‑1 (MQ=255)
                                                                                                                                     tGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgccttgacgacctttgcgccgagctcgacttcg                 >  2:793228‑M2/1‑16 (MQ=255)
                                                                                                                                      gTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGa                >  1:1127542/1‑150 (MQ=255)
                                                                                                                                         tGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgccttgacgacctttgcgccgagctcgacttcggtct             <  1:2001151‑M2/150‑139 (MQ=255)
                                                                                                                                         tGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCg             >  2:235425/1‑150 (MQ=255)
                                                                                                                                           gTCGGGCCTCTTCGCGGGCAAGCCCTCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATa                                                                     <  2:273121/92‑1 (MQ=255)
                                                                                                                                           gTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATa                                                                     <  2:1908027/92‑1 (MQ=255)
                                                                                                                                           gTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATa                                                                     >  1:1908027/1‑92 (MQ=255)
                                                                                                                                           gTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAAc                                       >  1:230122/1‑122 (MQ=255)
                                                                                                                                           gTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGc           <  1:1257028/150‑1 (MQ=255)
                                                                                                                                              gggCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTc        <  1:1273564/150‑1 (MQ=255)
                                                                                                                                              gggCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTAATCGGCttg        >  2:1116847/1‑149 (MQ=255)
                                                                                                                                                  ctctTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGcc    <  2:565967/150‑1 (MQ=255)
                                                                                                                                                   tctTCGCGGGCAAGCCCGCTCCTATAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAAt                                                                              >  1:2212571/1‑75 (MQ=255)
                                                                                                                                                   tctTCGCGGGCAAGCCCGCTCCTATAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAAt                                                                              <  2:2212571/75‑1 (MQ=255)
                                                                                                                                                    ctTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCaa  <  1:235425/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
GTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATT‑TTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAA  >  NC_002947/444980‑445276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.