New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1296495 =	NA (NA)	10 (0.110)	8/244	NT	NA	intergenic (‑242/‑324)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296515 =	NA (NA)					intergenic (‑262/‑304)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase

AGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAGTAGGTGCTGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGG  >  NC_002947/1296367‑1296627                                                                                                                                                     |                                                                                                                 aGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAGTAGGTGCTGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCt                                                                                                                 >  2:2196248/1‑150 (MQ=255)    tGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAGTAGGTGCTGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTc                                                                                                              <  1:2107915/150‑1 (MQ=255)              gAAGGATGGGGGAGGGGAAGTCTGGAGTAGGTGCTGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCaaa                                                                                                    >  2:37890/1‑150 (MQ=255)                   aTGGGGGAGGGGAAGTCTGGAGTAGGTGCTGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACACTGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGa                                                                                               <  1:1398189/150‑1 (MQ=255)                    tggtggAGGGGAAGTCTGGAGTAGGTGCTGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAg                                                                                              <  1:380431/150‑1 (MQ=255)                           ggggaAGTCTGGAGTAGGTGCTGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGGTGCGCTGTCGCGCAGCAAACATGAGGTGTACg                                                                                       >  1:12217/1‑150 (MQ=255)                            gggaAGTCTGGAGTAGGTGCTGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCGGCAAACATGAGGTGTACgg                                                                                      >  2:1587663/1‑150 (MQ=255)                             ggaAGTCTGGAGTAGGTGCTGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGAAGAGCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGc                                                                                     <  1:173105/150‑1 (MQ=255)                                     ggAGTAGGTGCTGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATAACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTc                                                                             <  1:370416/150‑1 (MQ=255)                                           ggTGCTGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCt                                                                                    >  2:1948427/1‑137 (MQ=255)                                           ggTGCTGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCt                                                                                    <  1:1948427/137‑1 (MQ=255)                                            gTGCTGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCg                                                                      >  1:1380475/1‑150 (MQ=255)                                              gCTGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTTCGGCTTCAGTTCCGCAGCGAc                                                                    <  2:2082751/150‑1 (MQ=255)                                                tGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGc                                                                  >  1:399458/1‑150 (MQ=255)                                                        tCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAATATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACAttt                                                          >  2:1644767/1‑150 (MQ=255)                                                        tCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACAttt                                                          >  2:509310/1‑150 (MQ=255)                                                          tGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTg                                                        >  2:488661/1‑150 (MQ=255)                                                           gATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGa                                                       <  2:1380475/150‑1 (MQ=255)                                                              gCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGaaaa                                                    >  2:1967806/1‑150 (MQ=255)                                                               ccGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGa                                                                                               <  2:753359/106‑1 (MQ=255)                                                               ccGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGACCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGa                                                                                               >  1:753359/1‑106 (MQ=255)                                                                cGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTATGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAaaaag                                                  >  2:65172/1‑150 (MQ=255)                                                                 ggACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTAc                                                                                        >  2:104996/1‑111 (MQ=255)                                                                 ggACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTAc                                                                                        <  1:104996/111‑1 (MQ=255)                                                                 ggACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAaaaaga                                                 >  2:1027117/1‑150 (MQ=255)                                                                   aCCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCGGTTCCGCAGCGACGCTGACATTTTGAaaaagaaa                                               >  1:1463773/1‑150 (MQ=255)                                                                   aCCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGCATGCGCTGTCGCCCCGCAAACATGAGTTGTACGTCTTCAGTTCCGCAGCGACGCTGACATTTTGAaaaagaaa                                               <  1:2102411/150‑1 (MQ=21)                                                                    ccGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGAACATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAaaaagaaaa                                              >  2:1389163/1‑150 (MQ=255)                                                                      gggCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAgg                                            <  1:1644767/150‑1 (MQ=255)                                                                        gCCCTTTCGGGGGTAAACCCGCTTCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCg                                          <  2:1465670/150‑1 (MQ=255)                                                                          ccTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGATATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGt                                        >  1:506985/1‑150 (MQ=255)                                                                          ccTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGt                                        >  2:1107974/1‑150 (MQ=255)                                                                            tttCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTg                                      >  2:1856641/1‑150 (MQ=255)                                                                            tttCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTg                                      >  2:963880/1‑150 (MQ=255)                                                                            tttCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTg                                      <  2:399458/150‑1 (MQ=255)                                                                                  gggTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCgg                                >  2:1962030/1‑150 (MQ=255)                                                                                  gggTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCgg                                >  2:189386/1‑150 (MQ=255)                                                                                     tAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGa                                                                                               <  1:1959252/84‑1 (MQ=255)                                                                                     tAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGa                                                                                               >  2:1959252/1‑84 (MQ=255)                                                                                      aaaCCCGCTTCTATAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTCTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAgg                            <  1:2301295/150‑1 (MQ=255)                                                                                      aaaCCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAgg                            <  1:2039947/150‑1 (MQ=255)                                                                                      aaaCCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAgg                            <  1:963880/150‑1 (MQ=255)                                                                                       aaCCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAggg                           <  1:1967806/150‑1 (MQ=255)                                                                                         cccGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCaaa                                                                                                    >  2:1739430/1‑75 (MQ=255)                                                                                         cccGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCaaa                                                                                                    <  1:1739430/75‑1 (MQ=255)                                                                                          ccGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACAtttt                                                         <  2:206091/117‑1 (MQ=255)                                                                                          ccGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACAtttt                                                         >  1:206091/1‑117 (MQ=255)                                                                                              tCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCGGGTAGGGcgatccc                    >  2:1943954/1‑144 (MQ=255)                                                                                                 tACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCt                 >  1:2150049/1‑150 (MQ=255)                                                                                                  aCAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCtt                >  1:2162887/1‑150 (MQ=255)                                                                                                  aCAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCtt                <  1:488661/150‑1 (MQ=14)                                                                                                    aGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCtttt              <  1:2196248/150‑1 (MQ=255)                                                                                                      gggACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGc            <  1:2046415/150‑1 (MQ=255)                                                                                                         aCCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCCGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCttt         <  2:1251922/150‑1 (MQ=255)                                                                                                            aTTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCGGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGtt      <  2:1463773/150‑1 (MQ=37)                                                                                                             ttGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTa     <  1:509310/150‑1 (MQ=35)                                                                                                                ttCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAggg  <  1:1556794/150‑1 (MQ=33)                                                                                                                                                     |                                                                                                                 AGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAGTAGGTGCTGGAATAGTCTGATGCCGGACCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGACCATTGTTCCGTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGG  >  NC_002947/1296367‑1296627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.