| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 211,900 | T→A | 7.3% | V5802V (GTT→GTA) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 211,900 | 0 | T | A | 7.3% | 274.5 / 12.4 | 96 | V5802V (GTT→GTA) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (43/45); new base A (4/3); total (47/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.12e-01 | |||||||||||
CGTGGGTACTGCCACTGTCACTGCCCCGGATAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAG > NC_002947/211753‑212049 | cGTGGGTACTGCCACTGTCACTGCCCCGGATAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTAc < 2:416830/150‑1 (MQ=35) ggTACTGCCACTGTCACTGCCCCGGATAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACcgac > 2:551663/1‑150 (MQ=35) cTGCCACTGTCACTGCCCCGGATAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGc < 2:1911513/150‑1 (MQ=35) tGCCACTGTCACTGCCCCGGATAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGGCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGTTCA‑GCACCACGGTTACCGACGAGcc > 1:2367261/1‑150 (MQ=255) cTGTCACTGCCCCGGATAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTa < 1:2380626/150‑1 (MQ=35) cACTGCCCCTGATAACGTCCACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCGACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGcc < 1:256159/150‑1 (MQ=255) cACTGCCCCGGATAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGcc < 2:1381894/150‑1 (MQ=35) aCTGCCCCGGATAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTATCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCg > 1:2391084/1‑150 (MQ=25) aCTGCCCCGGATAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCg > 1:683293/1‑150 (MQ=35) cTGCCCCGGATAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GTCTCCCAGTTACCGACGAGCCAGGTACGCCgg < 1:62843/150‑1 (MQ=11) tGCCCCGGATAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCggg < 1:825961/150‑1 (MQ=35) ccccGGATAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCa > 1:1387480/1‑150 (MQ=35) aTAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGTACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAg < 1:297913/150‑1 (MQ=21) aTAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAg < 2:719694/150‑1 (MQ=35) tAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAgg > 1:299130/1‑150 (MQ=35) gTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCAGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGAc < 2:2038140/150‑1 (MQ=21) tCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTATCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGAcc < 2:2391084/150‑1 (MQ=25) cGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGCCCCCGGTCA‑GCACGTCGGTTACAGACGGTCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCaa < 1:1069078/150‑1 (MQ=255) ggCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGCCCCCGGTCA‑GCACGTCGGTTACCGACGAGCAAGGTACGCCGGGCAACGAATGCTATCTGTTCAAg < 2:1956064/150‑1 (MQ=11) aaCGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAg > 1:442252/1‑112 (MQ=37) aaCGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAg < 2:442252/112‑1 (MQ=38) cTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTAACcgacgtgc > 2:1319379/1‑99 (MQ=255) cTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTAACCGACGTGc < 1:1319379/102‑1 (MQ=255) tGTCTTGATGTCGATCGCAACCGTTGGCGGTGCGTATGTCAGCAAGTTCGAGTAACTGCCACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTAGTCAAGGTCACCATCA‑CGGc < 2:187543/150‑1 (MQ=11) tCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCACGGACG‑GGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGACGACCTGGTCAAGGTCACCGTCA‑CGGccc > 1:1354897/1‑149 (MQ=11) tCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCg > 2:421012/1‑150 (MQ=39) gATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCa < 1:2079081/150‑1 (MQ=39) gATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCa < 2:981260/150‑1 (MQ=38) gATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTc > 2:1846446/1‑150 (MQ=40) gATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTc > 2:1318478/1‑150 (MQ=255) tACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGaa > 1:595726/1‑103 (MQ=38) tACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGaa < 2:595726/103‑1 (MQ=38) tACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTa < 1:96932/148‑1 (MQ=39) tACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTa > 2:96932/1‑148 (MQ=40) tACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGc > 1:1710143/1‑150 (MQ=255) tACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGc > 2:1072491/1‑150 (MQ=255) aCCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCATGTGGCATGGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGcc < 2:2372256/150‑1 (MQ=14) aCCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGc < 2:1279021/105‑1 (MQ=38) aCCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGc > 1:1279021/1‑105 (MQ=35) aCCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGcc < 1:1801785/150‑1 (MQ=40) cGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCG‑CGGCCGACCAGACTTCGGTAGCCga > 2:1382926/1‑150 (MQ=255) cGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCga < 2:299130/150‑1 (MQ=255) gTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCga > 1:2188538/1‑149 (MQ=40) gTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCga < 2:2188538/149‑1 (MQ=40) tGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGCGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGAc < 2:1652824/150‑1 (MQ=25) tCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCt > 1:439868/1‑150 (MQ=35) agCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTc < 1:698601/149‑1 (MQ=25) cAAGTTCAAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCAc > 1:1316318/1‑150 (MQ=25) gTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGt > 2:546887/1‑150 (MQ=35) gTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGt > 2:1903235/1‑150 (MQ=35) ttCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGtt > 1:1756168/1‑150 (MQ=35) ttCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGtt > 1:1820425/1‑150 (MQ=35) gAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCAc > 1:316060/1‑150 (MQ=35) cAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGAACTGGTCAAGGTCACCATCA‑CGGGAGACCAGGCGGCGTTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTc < 1:421012/150‑1 (MQ=11) ttGACAGCGGAAAAGACCTCGGTCA‑GCACGTCGGTGACCGACGAGCAAGGTACGCCGGGCGATGAGGGCGACCTAGTGAAGGTCACCATCA‑CGGCCGACCAGTCTTCGGTAGCCGAGAACGGCAAACCGACCTTCACTGTTCGCGTCAAc < 2:2367261/149‑1 (MQ=11) tGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTc > 2:131811/1‑122 (MQ=35) tGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTc < 1:131811/122‑1 (MQ=37) gACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCa < 1:546887/150‑1 (MQ=35) acTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGc < 1:337000/90‑1 (MQ=33) acTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGc > 2:337000/1‑90 (MQ=33) acTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGcc > 2:1114300/1‑150 (MQ=35) acTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGcc > 1:1571129/1‑150 (MQ=35) cTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCg > 2:1645720/1‑150 (MQ=35) tGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCa < 2:1034222/94‑1 (MQ=34) tGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCa > 1:1034222/1‑94 (MQ=34) tGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCAc < 2:237328/137‑1 (MQ=37) tGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCAc > 1:237328/1‑137 (MQ=37) tGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCAc < 2:236836/137‑1 (MQ=37) tGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCAc > 1:236836/1‑137 (MQ=37) aCCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCAc > 2:95806/1‑150 (MQ=34) aCCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCAc > 2:2269535/1‑150 (MQ=35) aCCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCAc > 1:94903/1‑150 (MQ=34) cccGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCGGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCCACCAACCGCTGGCTCACGa > 2:379202/1‑150 (MQ=255) cccGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCga > 1:560433/1‑99 (MQ=39) cccGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCga < 2:560433/99‑1 (MQ=39) ccGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTgg > 1:1567549/1‑142 (MQ=35) ccGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTgg < 2:1567549/142‑1 (MQ=35) ccGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGAc > 2:1264427/1‑150 (MQ=35) ggTCA‑GCAAGTCCGTTCCCGACGCTCTAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCAACATCA‑CTGCCGACCAGACTTCGGTAGCCGACAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCt < 2:559941/150‑1 (MQ=11) gTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTg < 1:2269535/150‑1 (MQ=35) gTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTg < 2:1387480/150‑1 (MQ=35) cA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGt < 2:1571129/150‑1 (MQ=35) cgCACGTCGGTTACCGACGAGCCAGGTACGCCGAGCAATGTAGGCTACCGGGTCAAGGTCACCATCACCGGCCG‑GCACACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTc < 1:539862/149‑1 (MQ=1) tcGTCGGTAACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCAc < 1:1065917/116‑1 (MQ=255) tcGTCGGTAACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCAc > 2:1065917/2‑117 (MQ=255) tcGTCGGTAACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTc > 2:527317/2‑147 (MQ=25) tcGTCGGTAACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTc < 1:527317/146‑1 (MQ=25) tcGTCGGTAACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTg > 2:1418300/2‑150 (MQ=25) cGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGa < 2:1820425/150‑1 (MQ=35) cGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGa < 1:1114300/150‑1 (MQ=35) gTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCAGGTCGTGag > 2:1824307/1‑149 (MQ=25) gTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGATAGCCGAGAAc < 1:1439510/91‑1 (MQ=255) gTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGATAGCCGAGAAc > 2:1439510/1‑91 (MQ=255) cGGTTACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGAccc < 1:1072491/150‑1 (MQ=25) gTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGa < 2:1066093/70‑1 (MQ=37) gTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGa > 1:1066093/1‑70 (MQ=37) ttACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGa < 1:95806/150‑1 (MQ=35) ttACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGa < 1:1903235/150‑1 (MQ=35) tACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCAGGTCGTGagccagcg < 1:1824307/150‑8 (MQ=255) | CGTGGGTACTGCCACTGTCACTGCCCCGGATAACGTCTACGTCGGCAGCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGGCGGTGCGGATGTCGGCAAGTTCGAGCAACTGACACTGGACAAGACCCCGGTCA‑GCACGTCGGTTACCGACGAGCCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCA‑CGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAG > NC_002947/211753‑212049 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |