Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,576,484 C→G 6.7% P540A (CCG→GCG)  PP_2258 → sensory box protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,576,4840CG 6.7% 278.5 / 9.5 89P540A (CCG→GCG) PP_2258sensory box protein
Reads supporting (aligned to +/- strand):  ref base C (38/45);  new base G (3/3);  total (41/48)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.27e-01

CGACCTGGCGCTGACGGAGGCAGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTGCTTGTCGATCAGGGGTGGCTTCGAAAAC  >  NC_002947/2576339‑2576631
                                                                                                                                                 |                                                                                                                                                   
cgacCTGGCGCTGACGGAGGCAGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCACCCGGCCGAt                                                                                                                                                 <  2:2017711/150‑1 (MQ=255)
 gacCTGGCGCTGACGGAGGCAGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATg                                                                                                                                                >  2:1883723/1‑150 (MQ=255)
    cTGGCGCTGACGGAGGCAGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGccc                                                                                                                                             >  1:687735/1‑150 (MQ=255)
     tGGCGCTGACGGAGGCAGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGc                                                                                                                                                     <  1:885744/141‑1 (MQ=255)
     tGGCGCTGACGGAGGCAGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGc                                                                                                                                                     >  2:885744/1‑141 (MQ=255)
     tGGCGCTGACGGAGGCAGTGATCGGCCTGGCGCGAGCGTTCGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGACGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCAGATGCCCg                                                                                                                                            >  1:2300845/1‑150 (MQ=255)
        ggcTGACGGAGGCAGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGGCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCa                                                                                                                                         <  2:364360/149‑1 (MQ=255)
        cgatctcGGAGGCAGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCa                                                                                                                                         <  1:573425/144‑1 (MQ=255)
           tGACGGAGGCAGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTg                                                                                                                                      >  2:2302621/1‑150 (MQ=255)
               ggAGGCAGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGt                                                                                                                                  >  2:1985698/1‑150 (MQ=255)
               ggAGGCAGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGCGCGTCGGGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAgagatcg                                                                                                                                  >  2:573425/1‑147 (MQ=255)
                     aGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAg                                                                                                                             <  2:524025/149‑1 (MQ=255)
                     aGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAg                                                                                                                             >  1:524025/1‑149 (MQ=255)
                     aGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGc                                                                                                                            >  1:47749/1‑150 (MQ=255)
                     aGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGGGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGc                                                                                                                            >  2:2191159/1‑150 (MQ=255)
                             gCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGcac                                                                                                                    >  1:1407350/1‑150 (MQ=255)
                               cTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAg                                                                                                                  <  1:210185/150‑1 (MQ=255)
                               cTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAg                                                                                                                  >  2:282673/1‑150 (MQ=255)
                                 ggCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTCATGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGc                                                                                                                <  2:2144063/150‑1 (MQ=255)
                                    gcgAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGGCCGGGCGATGca                                                                                                                                              >  1:1208813/1‑116 (MQ=255)
                                    gcgAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGGCCGGGCGATGca                                                                                                                                              <  2:1208813/117‑2 (MQ=255)
                                     cgAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTAc                                                                                                            <  1:583426/150‑1 (MQ=255)
                                       aGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACca                                                                                                          <  1:1994002/150‑1 (MQ=255)
                                          gTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACcagca                                                                                                       <  1:1883723/150‑1 (MQ=255)
                                          gTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACcagca                                                                                                       <  2:1407350/150‑1 (MQ=255)
                                                 cgcgAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCcagtg                                                                                                <  2:809034/150‑1 (MQ=255)
                                                    gAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCcagtgcag                                                                                             >  2:1674678/1‑150 (MQ=255)
                                                          aTTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGt                                                                                       <  2:1943961/150‑1 (MQ=255)
                                                          aTTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGt                                                                                       <  2:269643/150‑1 (MQ=255)
                                                               cGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGAccc                                                                                  >  2:1538945/1‑150 (MQ=255)
                                                                gAGGGGCTGGAGAGTGTCGAGCATGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGGGACCCt                                                                                 >  2:1093283/1‑150 (MQ=255)
                                                                   gggCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGa                                                                              <  1:750745/150‑1 (MQ=255)
                                                                   gggCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGa                                                                              >  2:31379/1‑150 (MQ=255)
                                                                     gCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGGCCGGGCGATGcag                                                                                                                                             >  1:209415/1‑83 (MQ=255)
                                                                     gCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGGCCGGGCGATGcag                                                                                                                                             <  2:209415/85‑3 (MQ=255)
                                                                     gCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAg                                                                            <  1:734127/150‑1 (MQ=255)
                                                                      cTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAgg                                                                           >  1:912372/1‑150 (MQ=255)
                                                                           gagTTTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGaa                                                                             >  2:1844420/1‑143 (MQ=255)
                                                                           gagTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGaa                                                                             <  1:1844420/143‑1 (MQ=255)
                                                                           gagTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGtcatc                                                                      <  2:1251856/150‑1 (MQ=255)
                                                                                tCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCgg                                                                 <  1:49801/150‑1 (MQ=255)
                                                                                  gAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGtcatca                                                                     >  2:1034136/1‑144 (MQ=255)
                                                                                  gAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGtcatca                                                                     <  1:1034136/144‑1 (MQ=255)
                                                                                  gAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGc                                                               >  2:899586/1‑150 (MQ=255)
                                                                                      aCGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTg                                                           <  1:1985698/150‑1 (MQ=255)
                                                                                       cGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTgg                                                          <  1:866856/150‑1 (MQ=255)
                                                                                        ggTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCCGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGt                                                         >  1:1775772/1‑150 (MQ=255)
                                                                                          tCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCt                                                       >  1:438175/1‑150 (MQ=255)
                                                                                          tCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCt                                                       <  2:47749/150‑1 (MQ=255)
                                                                                          tCGGGTACTGATGGGCCTGGGCTGCGAGCTGCCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCt                                                       >  1:2372074/1‑150 (MQ=255)
                                                                                             ggTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGa                                                    >  1:481848/1‑150 (MQ=255)
                                                                                             ggTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACAGCATTGGGTCATCAGCGGGCCGTGGTCTTGa                                                    <  1:1873008/150‑1 (MQ=255)
                                                                                              gTACTGATGGGCCTGGGCTGCGAGCTAGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACGGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGAc                                                   >  1:1172852/1‑150 (MQ=255)
                                                                                               tACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTTCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGAcc                                                  >  1:2177766/1‑150 (MQ=255)
                                                                                                   gATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCggg                                                                <  2:1328743/132‑1 (MQ=255)
                                                                                                   gATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCggg                                                                >  1:1328743/1‑132 (MQ=255)
                                                                                                      gggCCTGGGCTGCGAGCTGGCGCAGGTTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACgg                                           >  2:629773/1‑150 (MQ=255)
                                                                                                      gggCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACgg                                           >  2:1814915/1‑150 (MQ=255)
                                                                                                      gggCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGCCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACgg                                           <  1:1760299/150‑1 (MQ=255)
                                                                                                         ccTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACggggg                                        <  2:687735/150‑1 (MQ=255)
                                                                                                          cTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCcagtg                                                                                                >  2:606629/1‑93 (MQ=255)
                                                                                                          cTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCcagtg                                                                                                <  1:606629/93‑1 (MQ=255)
                                                                                                           tGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGa                                                    >  2:571617/1‑136 (MQ=255)
                                                                                                           tGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGa                                                    <  1:571617/136‑1 (MQ=255)
                                                                                                                tGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCAc                                 <  1:1093283/150‑1 (MQ=255)
                                                                                                                  cGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCt                               <  1:1814915/150‑1 (MQ=255)
                                                                                                                    ggCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTGc                             <  2:378792/149‑1 (MQ=255)
                                                                                                                      cTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTGCtt                           <  1:282673/150‑1 (MQ=255)
                                                                                                                       tGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTGCTTg                          >  2:1056205/1‑150 (MQ=255)
                                                                                                                        ggCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGCCCTGCACGGGGGGCGCCACCTGCTTGt                         <  1:2191159/150‑1 (MQ=255)
                                                                                                                         gcgcAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGt                                                            <  2:1422247/114‑1 (MQ=255)
                                                                                                                         gcgcAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGt                                                            >  1:1422247/1‑114 (MQ=255)
                                                                                                                         gcgcAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTGCTTGTc                        <  2:438175/150‑1 (MQ=255)
                                                                                                                                gTTACTGCATCGCCCGGCTGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACTGGGGGCGCCACCTGCTTGTCGATCAgg                 <  2:2300845/150‑1 (MQ=255)
                                                                                                                                gTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTGCTTGTCGATCAgg                 <  1:140554/150‑1 (MQ=255)
                                                                                                                                 ttgcTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTAACAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTGCTTGTCGATCAggg                <  2:1023295/147‑1 (MQ=255)
                                                                                                                                    gggCATCGGCCGGGCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTg                                                           <  1:703347/102‑1 (MQ=255)
                                                                                                                                    gggCATCGGCCGGGCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTg                                                           >  2:703347/3‑104 (MQ=255)
                                                                                                                                    cTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTGCTTGTCGATCAGGGGTg             >  1:1817526/1‑150 (MQ=255)
                                                                                                                                     tGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGtcat                                                                       <  1:155012/91‑1 (MQ=255)
                                                                                                                                     tGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGtcat                                                                       >  2:155012/1‑91 (MQ=255)
                                                                                                                                     tGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTGCTTGTCGATCAGGGGTgc            <  2:2291047/150‑2 (MQ=255)
                                                                                                                                       cATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCt                                                                                                                          <  1:1938847/38‑1 (MQ=255)
                                                                                                                                       cATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCt                                                                                                                          >  2:1938847/1‑38 (MQ=255)
                                                                                                                                        aTCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTg                              <  1:2206468/129‑1 (MQ=255)
                                                                                                                                        aTCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTg                              >  2:2206468/1‑129 (MQ=255)
                                                                                                                                         tCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTGCTTGTCGATCAGGGGTGGCTTc        <  1:180191/150‑1 (MQ=255)
                                                                                                                                           gCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTGCTTGTCGATCAGGGGTGGCTTCGa      >  2:1030063/1‑150 (MQ=255)
                                                                                                                                             ccGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTGCTTGTCGATCAGGGGTGGCTTCGaaa    >  1:1456613/1‑150 (MQ=255)
                                                                                                                                               ggCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTGCTTGTCGATCAGGGGTGGCTTCGAAAAc  <  2:1817526/150‑1 (MQ=255)
                                                                                                                                               ggCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTGCTTGTCGATCAGGGGTGGCTTCGAAAAc  <  1:31379/150‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                   
CGACCTGGCGCTGACGGAGGCAGTGATCGGCCTGGCGCGAGCGTTTGGCCGCGAGGTGATTGCCGAGGGGCTGGAGAGTGTCGAGCACGGTCGGGTACTGATGGGCCTGGGCTGCGAGCTGGCGCAGGGTTACTGCATCGCCCGGCCGATGCCCGCCAGTGACGTGCAAGCCTGGGCACAGGCCTACCAGCAGCCAGTGCAGTGGCGTGACCCTTGAAGGTCATCAGCGGGCCGTGGTCTTGACCTGCACGGGGGGCGCCACCTGCTTGTCGATCAGGGGTGGCTTCGAAAAC  >  NC_002947/2576339‑2576631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑