| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,668,109 | T→C | 5.6% | intergenic (+84/‑83) | prpF → / → prpD | aconitate isomerase/2‑methylcitrate dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,668,109 | 0 | T | C | 5.6% | 272.5 / 3.7 | 90 | intergenic (+84/‑83) | prpF/prpD | aconitate isomerase/2‑methylcitrate dehydratase |
| Reads supporting (aligned to +/- strand): ref base T (43/41); new base C (2/3); total (45/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.75e-01 | |||||||||||
ATCATGAGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGG > NC_002947/2667960‑2668252 | aTCATGAGGCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGttt < 1:141566/150‑1 (MQ=255) tCATGAGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTg > 2:535950/1‑150 (MQ=255) cATGAGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGa < 2:1557466/150‑1 (MQ=255) ccGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCtg < 1:427398/150‑1 (MQ=255) ccGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCtg < 1:930849/150‑1 (MQ=255) cGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCtgt < 2:1001131/150‑1 (MQ=255) gTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCGCCCACA‑GGTA‑ATCACAGGGTTTGAATGCtgtt > 2:1987563/1‑149 (MQ=255) tGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGatat > 1:1694217/1‑150 (MQ=255) tGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGatat > 2:1583052/1‑150 (MQ=255) tCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATccc > 2:1409792/1‑150 (MQ=255) tCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCGCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCACTCCCACG‑GGGA‑AACAGAGGGTTTGCATGATGGTATATccc > 2:621632/1‑150 (MQ=255) cgcgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCt < 2:2033134/150‑1 (MQ=255) gcgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCtg < 1:257558/139‑1 (MQ=255) gcgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCtg > 2:257558/1‑139 (MQ=255) gcgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCtg > 2:2281040/1‑150 (MQ=255) cgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCtgt < 1:1578113/150‑1 (MQ=255) gTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCtgtg < 1:897789/150‑1 (MQ=255) tGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTgg > 1:448915/1‑150 (MQ=255) tGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTgg > 1:2363497/1‑150 (MQ=255) gATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGc < 1:2108791/150‑1 (MQ=255) gATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGc < 1:535950/150‑1 (MQ=255) aTGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGGATATCACAGCATTCAAACCCTGTGAT‑TACCTGTGGGAGCg < 2:1812013/150‑1 (MQ=18) aTGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCCCCCACA‑GGGATATCACAGCATTCAAACCCTGTGAT‑TACCTGTGGGAGCg > 2:1365839/1‑150 (MQ=18) tGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGGATATCACAGCATTCAAACCCTGTGAT‑TACCTGTGGGAGCgg < 1:41695/150‑1 (MQ=17) tGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGGATATCACAGCATTCAAACCCTGTGAT‑TACCTGTGGGAGCgg < 2:1170163/150‑1 (MQ=17) gggAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCTCTCGGCTTCAAGAGGGGTCGCTTAGCGGCCCTTCGCGGGCTTGCTCGCTCCNACAGGGNT‑ATCACAGCATTNAAACCCTGTGAT‑TACCTGTGGGAGCgg < 1:1365839/149‑1 (MQ=17) cTGGGTTCGCGTGCCTGGCGATCGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GCTA‑ATCACAGGGTTTGAATGCTGTTATATCCCTGTGGGAGCGGGCAAGcc > 1:2108204/1‑150 (MQ=255) gTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGCTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCcgcg > 1:516631/1‑150 (MQ=255) ttCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGttt < 1:452833/110‑1 (MQ=255) ttCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGttt > 2:452833/1‑110 (MQ=255) gTGCCGGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGCGGGGCCGCTTGGCGGCTCTTCGCGGGCTTGCCCGCCCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGc < 1:621632/150‑1 (MQ=38) aTAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCAcagcag > 1:2104026/1‑150 (MQ=255) aGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCggg > 1:1654122/1‑122 (MQ=255) aGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCggg < 2:1654122/122‑1 (MQ=255) gCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGccc < 2:1952286/150‑1 (MQ=255) gCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGccc > 1:1952286/1‑150 (MQ=255) aGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAAtt < 1:2259366/150‑1 (MQ=255) gCACCACTGGCGCTCGGCTTCAAGAGGGGCCTCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCtgt > 2:2152307/1‑103 (MQ=255) gCACCACTGGCGCTCGGCTTCAAGAGGGGCCTCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCtgt < 1:2152307/103‑1 (MQ=255) ccacTGGCGCTCGGCTTCAAGAGGGGCCGTTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAg < 1:2203303/122‑1 (MQ=255) ccacTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAg > 2:2203303/1‑122 (MQ=255) ccacTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGa < 2:2227399/150‑1 (MQ=255) cacTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGaa > 1:1598340/1‑150 (MQ=255) acTGGCGATCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTTGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAg < 1:2152540/150‑1 (MQ=255) gcTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCaa > 1:993961/1‑104 (MQ=255) gcTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCaa < 2:993961/104‑1 (MQ=255) gcTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCt < 2:1694217/150‑1 (MQ=255) cTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTTCCACA‑GGTA‑ATCCCAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTg < 1:2121505/150‑1 (MQ=255) ttCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCgg < 1:1079088/93‑1 (MQ=255) ttCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCgg > 2:1079088/1‑93 (MQ=255) ttCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCCAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATg > 1:2380449/1‑150 (MQ=255) tCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCCCA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGa > 2:555182/1‑150 (MQ=255) tCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGa < 1:1583052/150‑1 (MQ=255) tCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCGCCCCCA‑AGTA‑TTTACAATACTTGAATGCTTTGATATCCCTGTGGGAGCGGGCCAGCCCGCGAAAGGCTGCACAGCAGCCCCGGCCATTCCCAAGGGAGCTGCATATGa > 2:84829/1‑150 (MQ=25) aaGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAgc < 2:448915/150‑1 (MQ=255) agagGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAgcg > 1:699152/1‑150 (MQ=255) gagGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTGGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAgcgc < 1:1987563/150‑1 (MQ=255) cGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTa > 2:410177/1‑150 (MQ=255) tttGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGaa < 1:1155759/91‑1 (MQ=255) tttGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGaa > 2:1155759/1‑91 (MQ=255) tttGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGAc < 2:2104026/150‑1 (MQ=255) gCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAAc < 2:2363497/150‑1 (MQ=255) cTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTATGAAGGGAGCTGGATATGAGCGCCAACGTAAACCTCAACGAt > 1:819753/1‑150 (MQ=255) cTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATAACAGGGTTTAAATGCTGTAGTAAGCCTGTGAGAGCGGTCAAGCCCTCGGAGGGCTGCACAGCAGCCCCGGCAATTCTGACGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACggt > 2:884133/1‑148 (MQ=37) gcgGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGcc > 2:1608931/1‑150 (MQ=255) cgGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGccc < 1:1608931/150‑1 (MQ=255) gggCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCg < 1:410177/150‑1 (MQ=255) gCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAgcgc > 1:1494800/1‑123 (MQ=255) gCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAgcgc < 2:1494800/123‑1 (MQ=255) gCTGGCCCGCGCCCACA‑TGTA‑ATCACAGGGTTTGAATGCTGTGATATCTCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGGGCGCCAACGTAGACCTCAACGATCGCCCGGa < 1:1068938/150‑1 (MQ=39) ttGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTg < 2:1600865/78‑1 (MQ=255) ttGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTg > 1:1600865/1‑78 (MQ=255) gCCCGCTCCCACA‑GGGATATCACAGCATTCAAACCCTGTGAT‑TACCTGTGGGAGCGGGCAAGCCCGCGGAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTAc > 2:453719/1‑150 (MQ=17) cccGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGaa < 2:699506/69‑1 (MQ=255) cccGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGaa > 1:699506/1‑69 (MQ=255) ccACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGATGGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGt > 1:1121009/1‑150 (MQ=255) ccACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGt > 1:1096237/1‑150 (MQ=255) caca‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAgg > 1:2333417/1‑93 (MQ=255) caca‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAgg < 2:2333417/93‑1 (MQ=255) caca‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTAc > 1:2246127/1‑141 (MQ=255) caca‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTAc < 2:2246127/141‑1 (MQ=255) caca‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTg < 1:2281040/150‑1 (MQ=255) caca‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCCGCAaagcggc > 2:1445007/1‑73 (MQ=21) caca‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCCGCAAagcggc < 1:1445007/76‑1 (MQ=21) a‑GGTA‑ATCTCAGGTTTTCATTGTTGTAATATCTCTGTGGTTGCGGGCATGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTa < 1:84829/150‑1 (MQ=255) tA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACaa > 1:468753/1‑150 (MQ=255) acaGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCt < 2:1096237/150‑1 (MQ=255) atggTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGATCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTgg > 2:1349886/3‑150 (MQ=255) aGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGCGTCGGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTgg > 1:151093/1‑150 (MQ=255) aGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGAGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTgg > 1:465552/1‑150 (MQ=255) gTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGaa < 1:643896/75‑1 (MQ=255) gTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGaa > 2:643896/1‑75 (MQ=255) gTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGa > 2:2326904/1‑103 (MQ=255) gTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGa < 1:2326904/103‑1 (MQ=255) | ATCATGAGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACA‑GGTA‑ATCACAGGGTTTGAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGG > NC_002947/2667960‑2668252 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |