| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,729,285 | T→G | 5.5% | intergenic (+49/‑312) | PP_2390 → / → PP_2392 | LysR family transcriptional regulator/MFS transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,729,285 | 0 | T | G | 5.5% | 416.1 / 9.7 | 134 | intergenic (+49/‑312) | PP_2390/PP_2392 | LysR family transcriptional regulator/MFS transporter |
| Reads supporting (aligned to +/- strand): ref base T (59/67); new base G (3/5); total (62/72) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 134 total aligned reads displayed.
GCCAGCCCAAAAGCGCGGCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCGGTGGTTCAAGGCAAA > NC_002947/2729138‑2729429 | aGCCCAAAAGCGCGGCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTgcc < 1:516567/150‑1 (MQ=255) aGCCCAAAAGCGCGGCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTgcc > 2:1880682/1‑150 (MQ=255) aGCCCAAAAGCGCGGCAGACGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTgcc < 2:1591304/150‑1 (MQ=255) cccAAAAGCGCGGCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTgccgc > 2:1459083/1‑150 (MQ=255) cAAAAGCGCGGCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGccc > 1:1541528/1‑150 (MQ=255) aaaGCGCGGCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCAGATgccgccaaa < 1:2022372/150‑4 (MQ=255) aaaGCGCGGCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCAAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCAGATgccgccaaa < 2:179455/150‑4 (MQ=255) aGCGCGGCAGATGCACAAGCTGCGTGCCTTCCTGCTCGGCCCGACA‑CGACGCTCTTCCGATAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGAc < 2:1268840/150‑1 (MQ=255) gcgGCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATTAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGc < 2:455193/150‑1 (MQ=255) gcgGCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGACGCCCCGAGGGc > 2:1377805/1‑150 (MQ=255) ggCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCca < 2:377698/150‑1 (MQ=255) cAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCcaca < 2:191227/150‑1 (MQ=255) aTGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCAcagca < 1:1063758/150‑1 (MQ=255) aTGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCAcagca < 2:1786689/150‑1 (MQ=255) acaAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCAGATgccgccaaa < 2:463948/134‑4 (MQ=255) gcagggTGACTTCCTGCTCGGTCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAGGTGGATGCATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAg < 2:2385141/145‑1 (MQ=255) gCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTgcc < 2:762413/121‑1 (MQ=255) gCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCAGGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTgcc > 1:762413/1‑121 (MQ=255) cGTGACTTCTTGCTCGGCAAGGTCCAGCAGATG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACCGCAGATAGAAGCTGc < 2:445305/150‑1 (MQ=255) cTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCt < 2:2256117/143‑1 (MQ=255) cTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCt > 1:2256117/1‑143 (MQ=255) cTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGtt > 2:2024514/1‑150 (MQ=255) cTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCAGCAACTTTGCCCGACGCCGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGtt < 2:1892112/150‑1 (MQ=255) gCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTcc < 2:929670/150‑1 (MQ=255) tCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCAt > 1:2328078/1‑150 (MQ=255) ggCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGa > 1:600115/1‑150 (MQ=255) ggCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGa < 1:1493104/150‑1 (MQ=255) ggCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGa > 1:331756/1‑150 (MQ=255) cAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAgt > 1:613594/1‑150 (MQ=255) tACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAgtcgtc < 2:331756/150‑1 (MQ=255) gccgcTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAgg > 1:2117792/1‑150 (MQ=255) cgcTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGa < 1:1001097/146‑1 (MQ=255) cgcTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGa > 2:1001097/1‑146 (MQ=255) tG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCcgc < 1:724129/122‑1 (MQ=255) tG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCcgc > 2:724129/1‑122 (MQ=255) ccTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGAc < 2:600115/150‑1 (MQ=255) ccTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGAc < 1:1007396/150‑1 (MQ=255) cTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGtt > 1:2033160/1‑124 (MQ=255) cTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGtt < 2:2033160/124‑1 (MQ=255) cTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGAcc > 2:1430157/1‑150 (MQ=255) cTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGAcc > 1:1755073/1‑150 (MQ=255) tACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCa > 1:1158949/1‑150 (MQ=255) tACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCa > 2:2067893/1‑150 (MQ=255) tACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCa > 2:41088/1‑150 (MQ=255) aGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAgggt < 2:709100/150‑4 (MQ=255) aGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGa < 1:2067893/150‑1 (MQ=255) aGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGa < 1:1288458/150‑1 (MQ=255) tCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATc < 2:940217/150‑1 (MQ=255) aaCTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCgg > 2:2065938/1‑150 (MQ=255) aCTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCGTCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCa > 1:2334449/1‑137 (MQ=255) aCTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCGTCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCa < 2:2334449/137‑1 (MQ=255) aCTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGc < 2:1158949/150‑1 (MQ=255) tGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTc < 1:1459083/150‑1 (MQ=255) gTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCg > 1:1573866/1‑69 (MQ=255) tACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGt < 2:685177/101‑1 (MQ=255) tACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGt > 1:685177/1‑101 (MQ=255) tACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTcgc > 2:2268558/1‑150 (MQ=255) tACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTcgc > 1:2208863/1‑150 (MQ=255) cGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGa < 1:1880682/150‑1 (MQ=255) cGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGa < 1:2065938/150‑1 (MQ=255) ggTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAg > 2:543581/1‑115 (MQ=255) ttGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGt > 2:532861/1‑126 (MQ=255) ttGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGt < 1:532861/126‑1 (MQ=255) tGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCa > 1:2257167/1‑150 (MQ=255) tACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGtt > 1:1204802/1‑150 (MQ=255) aCCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATa > 2:1981395/1‑74 (MQ=255) aCCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTg < 1:1430157/150‑1 (MQ=255) cccGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGc < 2:739573/62‑1 (MQ=255) cccGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGa > 1:1120639/1‑150 (MQ=255) cgagcgagCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTACATGAAGTCGTCGAGGACAATGAACAGGTAGCCATCGGCCAGTTCGCGACCCACGTTGAAg > 2:2372260/1‑150 (MQ=255) gagcgagcATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGAcc > 1:2382548/1‑139 (MQ=255) gcATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCa > 2:1961910/1‑150 (MQ=255) tGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGAc > 2:221624/1‑150 (MQ=255) aGTCGATGAATACACGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCCCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAgg > 2:164931/1‑150 (MQ=255) gTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTg < 1:73653/104‑1 (MQ=255) cGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGaa > 1:483841/1‑133 (MQ=255) gATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAAt > 2:1197412/1‑150 (MQ=255) aTGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAg < 2:1883966/102‑1 (MQ=255) aTGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAg > 1:1883966/1‑102 (MQ=255) aaTACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCcg < 2:1541528/150‑1 (MQ=255) cccGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCggt < 1:332787/150‑1 (MQ=255) ccGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATATAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCggtg > 1:429332/1‑150 (MQ=255) ccGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGaa < 1:349406/123‑1 (MQ=255) ccGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGaa > 2:349406/1‑123 (MQ=255) ccGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCggtg < 2:1878806/150‑1 (MQ=255) cGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCAt < 1:324568/65‑1 (MQ=255) cGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCAt > 2:324568/1‑65 (MQ=255) cGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCggtgg > 2:1564534/1‑150 (MQ=255) cGCAACTTTGGCGGCATCTGCCGACCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGATAAGTAATGCCGCggtgg < 2:2205337/150‑1 (MQ=255) aCTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGa > 2:181629/1‑88 (MQ=255) aCTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGa < 1:181629/88‑1 (MQ=255) tttGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGtt > 1:997995/1‑113 (MQ=255) tttGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCGGTGGTTCAAg < 1:1886518/150‑1 (MQ=255) ttGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCCCGTTGAAGTCCGGCAGACAGGTAATGCCTCGGTGGTTCAAgg < 2:2013138/150‑1 (MQ=255) tGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAGTTCGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCGGTGGTTCAAGgc < 1:1834476/150‑1 (MQ=255) gggcggcAGATGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTc < 1:738781/98‑1 (MQ=255) gggcggcAGATGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTc > 2:738781/2‑99 (MQ=255) cggcATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCCCGTTGACGTTTTGCAGACAGGTAATGCCGCGGTGGTTCAAGgcaaa < 1:2268558/150‑1 (MQ=255) cggcATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCGGTGGTTCAAGgcaaa < 2:1575179/150‑1 (MQ=255) cggcATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCGGTGGTTCAAGgcaaa < 1:2024514/150‑1 (MQ=255) | GCCAGCCCAAAAGCGCGGCAGATGCACAAGCTGCGTGACTTCCTGCTCGGCCAGGTACCGCCGCTG‑GCCTACAAGGACATCAACTACCTGTACGGTTGAATACCCGAGCGAGCATGAAGTCGATGAATACCCGCAACTTTGGCGGCATCTGCCGCCCGGACGGCCACAGCAGATAGAAGCTGCCGCGCCGTTCCATGAAGTCGTCGAGGACACTGACCAGTGAGCCATCGGCCAGTTCGCGACCCACGTTGAAGTCCGGCAGACAGGTAATGCCGCGGTGGTTCAAGGCAAA > NC_002947/2729138‑2729429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |