Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,793,795	G→T	6.6%	intergenic (+61/+66)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,793,795	0	G	T	6.6%	270.5 / 5.3	84	intergenic (+61/+66)	PP_2445/PP_2446	membrane protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (37/41);  new base T (2/4);  total (39/45)
Fisher's exact test for biased strand distribution p-value = 6.81e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCA  >  NC_002947/2793650‑2793939                                                                                                                                                   |                                                                                                                                                  ggCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCAc                                                                                                                                               >  1:1601661/1‑150 (MQ=255)             ctcGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCTTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa                                                                                                                                  <  1:897760/150‑1 (MQ=255)              ccgatctcTAGCGGGGTCCTCAACAGCCGGGCCCGTCTAGCTCGTGTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAATGGGCGCCTCGCGCCCCTCTTGCGTACAAGCCCGCTGCACAGGTAGTCGCG‑TGGCACTG‑GCAACGCGAAt                                                                                                                                 <  2:19786/143‑1 (MQ=255)                gACGGCTATCGAGGTCCTAAACATCCTGGCCCGTCGAGCGCGGTTGAAGCGTGAGGCGGCTGAAGGTCTCACAAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATAc                                                                                                                               <  1:1022117/150‑1 (MQ=255)                  cGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TTGCCAGT‑GCCACGCGAATACCt                                                                                                                             <  1:807761/150‑1 (MQ=37)                    gCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCtgt                                                                                                                           <  2:1896460/150‑1 (MQ=255)                    gCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCtgt                                                                                                                           <  1:1567151/150‑1 (MQ=255)                     cTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCtgtg                                                                                                                          >  2:127549/1‑150 (MQ=255)                     cTATCGAGGTCCTCAACATCCTGGCCAGTCGCAAGCGTCTGTGGCGTGAGTCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCtgtg                                                                                                                          <  1:1140859/150‑1 (MQ=255)                      tATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa                                                                                                                                  <  1:1527103/141‑1 (MQ=255)                      tATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa                                                                                                                                  >  2:1527103/1‑141 (MQ=255)                      tATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGc                                                                                                                         <  1:127549/150‑1 (MQ=255)                      tATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGc                                                                                                                         >  2:1071653/1‑150 (MQ=255)                      tATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGCGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACCGGTATTCGCG‑TGGCACTG‑GCAACGCGAATaagatcgg                                                                                                                         >  1:19786/1‑143 (MQ=255)                       aTCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAATGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCa                                                                                                                        <  2:1884552/150‑1 (MQ=255)                          gAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa                                                                                                                                  >  2:283940/1‑137 (MQ=255)                          gAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa                                                                                                                                  <  1:283940/137‑1 (MQ=255)                                cTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTg                                                                                                               >  2:2230562/1‑150 (MQ=255)                                cTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTg                                                                                                               >  2:2096942/1‑150 (MQ=255)                                 tCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTgt                                                                                                              <  1:1071653/150‑1 (MQ=255)                                   aaCATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCAc                                                                                                                                               >  1:1666527/1‑116 (MQ=255)                                   aaCATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCAc                                                                                                                                               <  2:1666527/116‑1 (MQ=255)                                   aaCATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTgtca                                                                                                            <  1:2230562/150‑1 (MQ=255)                                    aCATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa                                                                                                                                  >  2:875626/1‑127 (MQ=255)                                    aCATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa                                                                                                                                  <  1:875626/127‑1 (MQ=255)                                        ccTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGc                                                                                                                      <  2:1035171/135‑1 (MQ=255)                                        ccTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGc                                                                                                                      >  1:1035171/1‑135 (MQ=255)                                            gCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTggg                                                                                                   >  2:907509/1‑150 (MQ=255)                                                          tttGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCt                                                                                     <  2:2334274/150‑1 (MQ=255)                                                            tGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGa                                                                                   <  1:1734011/150‑1 (MQ=255)                                                               aGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCtgt                                                                                                                           >  2:2137374/1‑107 (MQ=255)                                                               aGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCtgt                                                                                                                           <  1:2137374/107‑1 (MQ=255)                                                                    gAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCt                                                                                                                             <  2:1720914/100‑1 (MQ=255)                                                                    gAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCt                                                                                                                             >  1:1720914/1‑100 (MQ=255)                                                                       gcggcTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGc                                                                                                                  <  1:363338/108‑1 (MQ=255)                                                                       gcggcTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGc                                                                                                                  <  1:363754/108‑1 (MQ=255)                                                                       gcggcTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGc                                                                                                                  >  2:363338/1‑108 (MQ=255)                                                                       gcggcTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGc                                                                                                                  >  2:363754/1‑108 (MQ=255)                                                                          gcTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATAc                                                                                                                               >  1:2313975/1‑92 (MQ=255)                                                                          gcTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATAc                                                                                                                               <  2:2313975/92‑1 (MQ=255)                                                                            tGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TTGCCAGT‑GCCACGCGAATACCtgt                                                                                                                           >  1:415022/1‑94 (MQ=18)                                                                            tGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TTGC‑CAGTGCCACGCGAATACCtgt                                                                                                                           <  2:415022/94‑1 (MQ=17)                                                                            tGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAAc                                                                                                                                       >  2:1921774/1‑82 (MQ=255)                                                                            tGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAAc                                                                                                                                       <  1:1921774/82‑1 (MQ=255)                                                                            tGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACGTGTGGCGGTGATCGGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCgg                                                                   >  2:63157/1‑150 (MQ=255)                                                                             gAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa                                                                                                                                  >  2:508357/1‑86 (MQ=255)                                                                             gAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa                                                                                                                                  <  1:508357/86‑1 (MQ=255)                                                                                           aaaGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCg                                                                                              >  2:2067872/1‑108 (MQ=255)                                                                                           aaaGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCg                                                                                              <  1:2067872/108‑1 (MQ=255)                                                                                              ggggCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTc                                                 >  2:1156033/1‑150 (MQ=255)                                                                                                ggCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTTGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCtt                                               >  1:1728138/1‑150 (MQ=255)                                                                                                      tCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGc                                         <  1:1156033/150‑1 (MQ=255)                                                                                                               tctTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTg                                >  1:1796149/1‑150 (MQ=255)                                                                                                                           gCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTgtcagt                                                                                                          >  2:1303432/1‑64 (MQ=255)                                                                                                                           gCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTgtcagt                                                                                                          <  1:1303432/64‑1 (MQ=255)                                                                                                                            cccGCTGCACAGGTATTCGCGTTGCCAGT‑‑GCCACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCtgt                                      >  2:514509/1‑131 (MQ=25)                                                                                                                            cccGCTGCACAGGTATTCGCG‑TTGCCAGT‑GCCACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCtgt                                      <  1:514509/131‑1 (MQ=21)                                                                                                                            cccGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCg                   >  1:2192992/1‑150 (MQ=255)                                                                                                                            cccGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCg                   >  1:1605843/1‑150 (MQ=255)                                                                                                                             ccGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCgg                  <  1:907509/150‑1 (MQ=255)                                                                                                                             ccGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGAATTACCGTCTGTGGCTTGGCGGGTGCCTGCgg                  <  1:63157/150‑1 (MQ=255)                                                                                                                              cGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGt                 <  1:2226157/150‑1 (MQ=255)                                                                                                                              cGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGt                 <  2:1601661/150‑1 (MQ=255)                                                                                                                               gCTGCACAGGTATTCGCG‑TTGCCAGT‑GCCACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTg                >  1:139355/1‑150 (MQ=37)                                                                                                                                 tGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGt                                                  >  1:1736716/1‑114 (MQ=255)                                                                                                                                 tGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGt                                                  <  2:1736716/114‑1 (MQ=255)                                                                                                                                    acaGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAgg           >  2:581697/1‑150 (MQ=255)                                                                                                                                      aGGTATTCGCG‑TTGCCAGT‑GCCACGCTAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAggtg         <  2:139355/150‑1 (MQ=38)                                                                                                                                      aGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGccgccg                                                         >  2:2361787/1‑102 (MQ=255)                                                                                                                                      aGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGccgccg                                                         <  1:2361787/102‑1 (MQ=255)                                                                                                                                      aGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAggtg         <  2:1796149/150‑1 (MQ=255)                                                                                                                                         tATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACt                                            >  1:10495/1‑112 (MQ=255)                                                                                                                                         tATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACt                                            <  2:10495/112‑1 (MQ=255)                                                                                                                                          aTTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGgtgt     >  2:1844980/1‑150 (MQ=255)                                                                                                                                           ttCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAg                                                                             >  1:1010658/1‑77 (MQ=255)                                                                                                                                           ttCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAg                                                                             <  2:1010658/77‑1 (MQ=255)                                                                                                                                             cgcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCa  <  1:2374247/150‑1 (MQ=255)                                                                                                                                             cgcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAAAACTGCGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCa  <  1:2096942/150‑1 (MQ=255)                                                                                                                                              gcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTgtcag                                                                                                           <  2:917085/44‑1 (MQ=255)                                                                                                                                              gcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTgtcag                                                                                                           >  1:917085/1‑44 (MQ=255)                                                                                                                                              gcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCtgt                                      >  2:2361904/1‑113 (MQ=255)                                                                                                                                              gcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCtgt                                      <  1:2361904/113‑1 (MQ=255)                                                                                                                                              gcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCgg                            <  2:733910/123‑1 (MQ=255)                                                                                                                                              gcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCgg                            >  1:733910/1‑123 (MQ=255)                                                                                                                                                   |                                                                                                                                                  GGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCA  >  NC_002947/2793650‑2793939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑